Table 1 Comparison of transcriptome datasets as a reference for RNA-Seq analysis
Developmental stage | Counted reads | Genoscope 8x (30434 transcripts) | Genoscope 12x (26346 transcripts) | NCBI RefSeq (23720 transcripts) |
|---|---|---|---|---|
Young berries | 32 283 153 | 17 127 563 (53.0) | 16 340 511 (50.6) | 24 972 894 (77.3) |
Early-veraison | 36 280 465 | 21 111 334 (58.2) | 22 423 774 (56.6) | 30 695 559 (84.6) |
Late-veraison | 38 434 765 | 23 572 898 (61.3) | 22 522 747 (58.6) | 33 605 499 (87.4) |
Ripe berries | 41 947 022 | 24 606 233 (59.6) | 25 516 490 (58.1) | 35 251 865 (85.4) |
Total | 148 945 405 | 86 418 028 (58.0) | 86 803 522 (58.3) | 124 525 817 (83.6) |