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Table 2 Conserved and non-conserved miRNAs and their expression profiles at different tomato fruit ripening stages

From: Sculpting the maturation, softening and ethylene pathway: The influences of microRNAs on tomato fruits

MiRNA

family

References

Relative number of reads found in tomato

  

Mature green

Breaker stage

Red ripe

Conserved miRNAs

   

miR156

Zhang J et al, 2008; Yin Z et al, 2008; Moxon S et al, 2008.

115.99

31.95

15.14

miR157

Zhang J et al, 2008; Yin Z et al, 2008; Moxon S et al, 2008.

349.64

154.19

137.34

miR159

Pilcher et al, 2007; Zhang J et al, 2008; Moxon S et al, 2008.

59.89

48.06

82.55

miR160

Pilcher et al, 2007; Yin Z et al, 2008; Moxon S et al, 2008.

46.06

30.28

1.44

miR162

Pilcher et al l, 2007; Yin Z et al, 2008; Moxon S et al, 2008.

878.08

929.27

167.99

miR164

Pilcher et al, 2007; Moxon S et al, 2008

996.58

496.45

188.53

miR165

Moxon S et al, 2008

38.94

24.73

3.60

miR166

Pilcher et al, 2007; Moxon S et al, 2008

2750.64

2154.69

523.78

miR167

Zhang J et al, 2008; Yin Z et al, 2008; Moxon S et al, 2008.

265.06

209.19

8.29

miR168

Pilcher et al, 2007; Yin Z et al, 2008; Moxon S et al, 2008.

4967.40

3130.92

62.36

miR169

Zhang J et al, 2008; Yin Z et al, 2008; Moxon S et al, 2008.

0.84

0

0

miR171

Pilcher et al, 2007; Zhang J et al, 2008; Moxon S et al, 2008.

19.68

53.61

2.16

miR172

Zhang J et al, 2008; Yin Z et al, 2008; Moxon S et al, 2008; Itaya et al, 2008.

2993.09

2733.37

798.11

miR319

Zhang J et al, 2008; Yin Z et al, 2008; Moxon S et al, 2008.

0.42

0

0

miR390

Moxon S et al, 2008; Itaya et al, 2008.

97.98

46.67

2.16

miR394

Moxon S et al, 2008.

6.70

4.44

2.16

miR395

Zhang J G et al 2008; Moxon S et al, 2008.

0.41

0

0

miR396

Moxon S et al, 2008.

1300.58

2175.81

334.89

miR397

Moxon S et al, 2008.

0.42

0

0

miR399

Zhang J et al, 2008; Yin Z et al, 2008; Moxon S et al, 2008.

44.38

17.50

1.08

miR408

Pilcher et al, 2007, Moxon S et al, 2008

0.42

0.28

0

miR472

Itaya et al, 2008; Moxon S et al, 2008.

19.26

12.78

0.36

miR482

Pilcher et al, 2007.

1.67

2.51

0

miR827

http://ted.bti.cornell.edu/cgi-bin/TFGD/sRNA/miRNA.cgi

2.09

6.39

14.78

Non-conserved miRNAs

   

miR158

 

2.93

1.67

0

miR161

 

0.42

0

0

miR173

 

0.41

0

0

miR393

 

0.42

0

0

miR398

 

0.40

0

0

miR403

 

210.20

138.91

27.04

miR414

 

0.42

0

0

miR828

Moxon S et al, 2008.

0

0

0

miR858

Moxon S et al, 2008.

5.19

12.31

1.22

miR894

Moxon S et al, 2008.

10.05

5.00

0.36

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BMC Genomics

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