Table 1 Summary statistics of original and assembled data from transcriptomes of three Stegodyphus spp
From: Orthologous genes identified by transcriptome sequencing in the spider genus Stegodyphus
| Â | S lineatus | S. mimosarum | S. tentoriicola |
|---|---|---|---|
total number of reads | 457,675 | 542,510 | 459,994 |
mean length | 361 | 323 | 342 |
median length | 417 | 348 | 374 |
number of reads in assembly | 331,109 | 234,844 | 366,670 |
number of transcripts | 10,398 | 6,882 | 7,195 |
mean transcript length | 951 | 920 | 934 |
median transcript length | 714 | 716 | 733 |
mean coverage | 13.1 | 17.7 | 19.6 |
median coverage | 4.2 | 4.7 | 4.7 |
number of putative genes isogroups | 8,944 | 5,893 | 6,094 |
percentage of putative genes with splice variants | 8.1% | 8.5% | 8.4% |
number of detected SNPs | 6,425 | 943 | 5,043 |
number of detected indels | 112 | 15 | 54 |
number of sites for SNP search | 2,508,128 | 2,050,168 | 1,929,232 |
number of putative genes with protein blast hits in non-redundant protein database | 4,296 | 3,535 | 3,766 |
number of putative genes with protein blast hits in Drosophila UniProtKB | 1,077 | 918 | 993 |
Number of putative genes with GO annotation | 3,877 | 3,272 | 3,457 |