Table 2 Summary of read numbers based on the RNA-Seq data from 'Suli' pear during bud dormancy
Summary | Nov. 15 | Dec. 15 | Jan. 15 | Feb. 15 |
|---|---|---|---|---|
Total Clean Reads | 15,156,144 | 15,250,358 | 14,364,828 | 13,920,719 |
Total Mapped Reads | 12,267,906 | 12,336,227 | 11,604,366 | 10,973,976 |
Total Mapped Reads / Total Clean Reads | 80.94% | 80.89% | 80.78% | 78.83% |
Perfect Match Reads | 9,305,310 | 9,327,977 | 8,832,506 | 8,222,365 |
Perfect Match Reads / Total Clean Reads | 61.40% | 61.17% | 61.49% | 59.07% |
≤2 bp Mismatch Reads | 2,962,596 | 3,008,250 | 2,771,860 | 2,751,611 |
≤2 bp Mismatch Reads / Total Clean Reads | 19.55% | 19.73% | 19.30% | 19.77% |
Unique Match Reads | 7,902,930 | 7,977,788 | 7,457,487 | 7,042,745 |
Unique Match Reads / Total Clean Reads | 52.14% | 52.31% | 51.91% | 50.59% |
Multi-Position Match Reads | 4,364,976 | 4,358,439 | 4,146,879 | 3,931,231 |
Multi-Position Match Reads / Total Clean Reads | 28.80% | 28.58% | 28.87% | 28.24% |
Total-Unmapped Reads | 2,888,238 | 2,914,131 | 2,760,462 | 2,946,743 |
Total-Unmapped Reads / Total Clean Reads | 19.06% | 19.11% | 19.22% | 21.17% |