Skip to main content

Table 3 GenBank accession numbers, PCR primers, amplicon sizes and PCR efficiencies of the RT-qPCR assays used in the current experiment

From: Is chemically dispersed oil more toxic to Atlantic cod (Gadus morhua) larvae than mechanically dispersed oil? A transcriptional evaluation

Gene

Accession no.

Forward primer

Reverse primer

Amplicon size(bp)

PCR efficiency

CYP1A

EX725014

CCTTGACCTCTCGGAGAAAGAC

CGCCCCGCTAGCTATAGACA

146

1.85

CYP1B1

GmE090818c16636

CAGATGCCCCACATCACCTT

GATCGCCTTGTCTCCGTTCA

108

2.10

CYP1C1

GmE100215i31189

GTCAACCAGTCGTCCGTGAA

CGTTGTTCGTGAGGTCCTTGT

115

2.02

AhR2

EX728781

CAACCGGCGGTCCACAT

GCACCATGCAGTTGCCAGTA

132

2.08

AHRR

F2Z8C0H01CDEIU

GAGGTGTTTGTCTCCCGTCTCT

TTCACCAGGTCCACGCAGTA

77

2.06

GST pi

EX730032

GTCCCCCTGCTGCCATTC

CCTCCATACACCGCCACCTA

126

1.85

p53

EX723548

CGCTGCTGCTGAACTTCATG

GGATGGCTCTCCGGTTCAT

63

1.86

RAD51

 

AACCTAGCATCCCGCTCAAA

TGGTCAGGACAACTGGGATGT

91

1.89

IGF1

 

CTCTCCAAATCCGTCTCCTGTT

AGATGCGGGCAATGTCACAT

101

1.99

IGFBP1

 

GTGAGTCCTCCCTGGATGGA

CTCGACCCCAGGATCTTCTTC

79

2.02

Ferritin

EX726260

GCGTCTAGCTGGACCCCTTA

GGGCGACTACATCAGCAACC

101

2.08

Transferrin

EX722617

ACGACGGGTCAACTCGTTTG

AGTCACTCGGGCACAATGTG

139

1.83

HSP70

EX741726

CATGACATCGTCCTGGTTGGT

CGTAGGCCACAGCTTCATCA

121

1.84

HPX (WAP65-2)

GmE100215i27905

CGCCTGCTCTACATCGTCAA

CGTAGCGTCCAGTGGTCCTT

129

1.89

MCM2

GmE100215i14387

TGGAGGACGACGTGAACATG

TCGTTGTTGTCGCGTTTGAA

130

1.77

CDCA7

GmE100215i27789

GCATCTGCACCAACGTGAAG

CCCCCACACACTCTGGGTTA

120

2.02

EF1A

EX722124

CGGTATCCTCAAGCCCAACA

GTCAGAGACTCGTGGTGCATCT

93

1.97

B-actin

EX739174

CACAGCCGAGCGTGAGATT

ACGAGCTAGAAGCGGTTTGC

95

1.93

Ubiquitin

EX735613

GGCCGCAAAGATGCAGAT

CTGGGCTCGACCTCAAGAGT

69

1.93

RPL4

EX725958

GGTGCCATACAGCTGATCCA

CCAGGCATCACACTGCAGAA

123

1.83