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Table 1 CNEs associated to target genes that show changes in expression between zebrafish and mice

From: Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression

CNE Mt Zt Mg Zg Trans & Gene NoTrans & Gene
Hs259 Limbs + - + - Yes  
Spinal cord - + + +   
Hs327 Hindbrain + + + +   
Forebrain - + + +   
Spinal cord + + + -   Yes
Midbrain - + + +   
Hs382 Forebrain + + + +   
Somites + + + +   
Spinal cord + - + +   
DRG + - + - Yes  
Eye - + + +   
Notochord - + + +   
Hindbrain + - + +   
Midbrain + - + +   
Hs422 Forebrain + + + +   
Spinal cord - + - -   
Nose + - + - Yes  
Hindbrain - + - -   
Hs595 Forebrain + + + +   
Midbrain + - + +   
Nose + - + - Yes  
Hs609 Forebrain + - + +   
Limbs + - + - Yes  
Hs671 Forebrain + + + +   
Eye - + + +   
Hindbrain - + + +   
DRG - + + -   
Hs672 Forebrain + - + +   
Midbrain + + + +   
Spinal cord + - + - Yes  
Hs687 Forebrain + + + +   
Spinal cord + - + - Yes  
Hs774 Hindbrain + + + +   
Limbs + + + -   Yes
Forebrain - + + +   
Eye - + - + Yes  
Hs1114 Midbrain + + + +   
Hindbrain + + - +   
Spinal cord + + + +   
  1. Presence (+) or absence (−) of expression for the transgene in mice (Mt), transgene in zebrafish (Zt), mice target gene (Mg), and zebrafish target gene (Zg). “Trans & Gene” refers to changes in the expression of target genes consistent with trans- changes and “No Trans & Gene” indicates changes in the expression of target genes coincident with no trans events. DRG - Dorsal root ganglia.