Single nucleotide polymorphism discovery in cutthroat trout subspecies using genome reduction, barcoding, and 454 pyro-sequencing

Table 3 SNP genotyping and diversity results

	Bear River	Bonneville	Coastal	Colorado River	Greenback	Lahontan Basin	Rio Grande	Westslope	Yellowstone	Rainbow
Sample size	10	10	10	10	10	10	10	10	10	5
Polymorphic SNPs	67	55	41	65	75	45	57	20	40	19
MAF range	0.05 – 0.50	0.05 – 0.50	0.05 – 0.50	0.05 – 0.50	0.05 – 0.50	0.05 – 0.50	0.05 – 0.50	0.05 – 0.50	0.05 – 0.50	0.10 – 0.50
Average MAF	0.125	0.080	0.074	0.130	0.116	0.071	0.099	0.045	0.091	0.048
Highly polymorphic SNPs	22	11	11	20	17	11	14	7	19	10

Summary of the results from the single nucleotide polymorphism (SNP) genotyping and diversity analysis Listed are sample size, total number of polymorphic SNP loci, range of minor-allele frequencies (MAF), average MAF, and total highly polymorphic SNP loci.

ISSN: 1471-2164