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Table 3 Oligonucleotides used in this study

From: Genomic insights of protein arginine methyltransferase Hmt1 binding reveals novel regulatory functions

NAME

Sequence (5′ –> 3′)

Reference

5′ –PMA1(sense)

CGACGACGAAGACAGT GATAACG

This study

5′ –PMA1(anti-sense)

ATTGAATTGGACCGACGAAAAACAT AAC

This study

3′ –PMA1 (sense)

AAA CAA CCA GCT TCG GTG TGT GTG

This study

3′ –PMA1 (anti-sense)

TAG GAG CCA ACA AGA ATA AGC CGC

This study

ILV5 (sense)

ATT GGG TAC CAG TCC AAA GCA CCT

This study

ILV5 (anti-sense)

ACC GTC GAA GAA GCT ACC CAA TCT

This study

RPS25A (sense)

TGG GTA GCT AGA TCT GTG CTA TGG

This study

RPS25A (anti-sense)

GAA ATA GTG ACT GGC CAA TCC AGG

This study

GAL1 (sense)

TGCTAGATCGCCTGGTAGAG

[72]

GAL1 (anti-sense)

GCAAACCTTTCCGGTGCAAG

[72]

MND1 (sense)

CCATCATGGTACACAGGACTGAACA

This study

MND1 (anti-sense)

GGAGTGATACTGTCTGTCTCTTTGGC

This study

BET4 (sense)

CGACAGCAAGTTCAGTTTGCCACA

This study

BET4 (anti-sense)

AGCGAGTTTGGCTTCTGAGTTGGA

This study

SEC31 (sense)

CCAAATGATATCGCCCAGAGGAATG

This study

SEC31 (anti-sense)

CCGGCAGCCAAGTACAAAGTCAAA

This study

RPS13A (sense)

CAGAAAGCACTGGCAAGAACGTGT

This study

RPS13A (anti-sense)

TCTGCCAGCTCTGACCTTTCTGTT

This study

RPS14A (sense)

TGGTAAGGAAACCATCGCCAGAGT

This study

RPS14A (anti-sense)

TAACGTGAACGGCAGTGATACCGA

This study

YLL011W (sense)

AGCCAGTTTCCGATCTATCATGGG

This study

YLL011W (anti-sense)

GGCCTCCATTGGATTCCAGCAAAT

This study

snR37 (sense)

TGGAGTGTGAGTGATGAGGAGCTT

This study

snR37 (anti-sense)

GGAGTAGTCAAAGTTCATTCAGCTATGGG

This study

snR42 (sense)

CTGTTGGTGCTGAGGTAATCCATC

This study

snR42 (anti-sense)

ACCTCAGGTCATCACCATTTCATGGG

This study

ACT1 5′ end (sense)

GTCCCAATTGCTCGAGAGATTTCTC

This study

ACT1 5′ end(anti-sense)

CATGATACCTTGGTGTCTTGGTC

This study

ACT1 3′ end(sense)

TCGAACAAGAAATGCAAACCG

This study

ACT1 3′ end(anti-sense)

GGCAGATTCCAAACCCAAAAC

This study

CDC2 (sense)

CCTGCCTTTAAGGCTTATGGA

This study

CDC2 (anti-sense)

CCACGAATAGGCTCAATAACA

This study

TRA1 (sense)

CCAATTTTTGATAAGCCACCCTGA

This study

TRA1 (anti-sense)

CGTAATTTCTAAGGTCTTGTTCTCCCA

This study

SPS2 (sense)

ACTGTCCCGTCATTGATGCGTCTC

[73]

SPS2 (anti-sense)

GGGATCGTTGCATTAGTGTTAACC

[73]

No ORF (sense)

GAAAAAGTGGGATTCTGCCTGTGG

[68]

No ORF (anti-sense)

GTTTGCCACAGCGACAGAAGTATAACC

[68]

tG (CCC) D (sense)

AAATGCGGAAGCCGGGAATCGAA

This study

tG (CCC) D (anti-sense)

GGTATTTCTTTGCGCGGTTACGGT

This study

tL (UAG) L1 (sense)

GGT TAAACCCAC CTAAATCTGACGCC

This study

tL (UAG) L1 (anti-sense)

TGGCTAACCCAATGGCTTGT

This study

tW (CCA) P (sense)

AAGCTGAGTGTCCGCTGTGATGAT

This study

tW (CCA) P (anti-sense)

TTGCAATCGAAGGGTTGCAGGTTC

This study

tK (UUU )D (sense)

TGTTGGAACGGTAAAGACCAGTGC

This study

tK (UUU) D (anti-sense)

AAAGCCGAACGCTCTACCAACTGA

This study

tG (CCC) probe

ATGCTTGGGAAGCATAAATTCTA

This study

tL (UAG) probe

AAGATATCAGAGCCTAAATCTGACG

[71]

pre-t L(UAG) probe

GATATCAGAGATTTTAGAGGTTAAATCCACCT

[71]

5.8S probe

GCGTTGTTCATCGATGC

This study

tK (UUU) probe

TGACATTTCGGTTAAAAGCCGAACGCTCTACCAAC

[71]

tR (CCG) L (sense)

AAGTACGACATCAAAGTCGCCGAG

This study

tR (CCG) L (anti-sense)

TGCTAACCATTGCACTAGAGGAGC

This study

snR128 (sense)

ACAGTATACGATCACTCAGACATCC

This study

snR128 (anti-sense)

CACGGTGATGAAAGACTGGTTCCT

This study

tR (CCU) L (sense)

CCACATTCTCTACAATATTGATTTCCATCG

This study

tR (CCU) L (anti-sense)

CCATTACGCCAACGGAACCAACTT

This study

tL (UAG) L2 (sense)

ATCGACAGCTTCACGTGCCATTTG

This study

tL (UAG) L2 (anti-sense)

CTGATATCTTCGGATGCAAGGGTTCG

This study

tL (UAG) J (sense)

GGTTAAACCCACCTAAATCTGACGCC

This study

tL (UAG) J (anti-sense)

TGGCTAACCCAATGGCTTGT

This study