Table 2 Parsimony scores on the clustering tree of 23 open ocean samples belonging to 4 groups (Sargasso Sea, Caribbean Sea, Eastern Tropical Pacific and Tropical South Pacific) obtained by sequence signature methods using different dissimilarity measures based on the open ocean metagenomics data
From: Comparison of metagenomic samples using sequence signatures
k | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
|---|---|---|---|---|---|---|---|---|---|
d 2 | 6 | 6 | 6 | 7 | 7 | 7 | 7 | 7 | 6 |
d2S|M0 | 5 | 6 | 5 | 4 | 4 | 4 | 4 | 4 | 5 |
d2S|M1 | 11 | 6 | 5 | 6 | 5 | 5 | 6 | 5 | 4 |
d2S|M2 | NA | 8 | 4 | 6 | 5 | 5 | 5 | 5 | 5 |
d2S|M3 | NA | NA | 5 | 6 | 6 | 5 | 6 | 5 | 5 |
d2*|M0 | 5 | 5 | 4 | 4 | 6 | 6 | 6 | 7 | 7 |
d2*|M1 | 9 | 7 | 7 | 5 | 6 | 6 | 6 | 7 | 7 |
d2*|M2 | NA | 8 | 7 | 5 | 5 | 5 | 7 | 6 | 7 |
d2*|M3 | NA | NA | 6 | 5 | 5 | 5 | 7 | 7 | 6 |
Ma | 6 | 5 | 5 | 5 | 5 | 4 | 4 | 5 | 4 |
Eu | 6 | 6 | 5 | 6 | 8 | 7 | 7 | 7 | 7 |
Ch | 7 | 7 | 8 | 9 | 9 | 7 | 7 | 6 | 6 |
Hao | NA | 5 | 6 | 6 | 6 | 6 | 4 | 5 | 6 |
Willner | 7 | 6 | 5 |