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Table 3 Transitions and transversions in T. cruzi

From: A genomic scale map of genetic diversity in Trypanosoma cruzi

 

Observed counts

Substitutions

Global (all)

Synonymous

Non-synonymous

Non-coding

Nonsense

transitions (ts)

AG + GA

104,421

45,652

58,581

170

18

 

CT + TC

96,208

55,758

40,200

208

42

transversions (tv)

AC + CA

29,973

7,739

22,168

48

18

 

AT + TA

13,537

4,229

9,266

31

11

 

CG + GC

17,461

4,110

13,284

64

3

 

GT + TG

27,357

7,967

19,321

48

21

Ratio ts / tv

2.27

4.22

1.54

1.98

1.13

  1. The set of high-quality SNPs was used to count the ocurrences of transitions and transversions in different relevant partitions of the data.
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BMC Genomics

ISSN: 1471-2164

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