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Table 3 Annotation of INDELs in the Quarter Horse genome

From: Whole-Genome sequencing and genetic variant analysis of a quarter Horse mare

INDEL Location Total Homozygous Heterozygous
INDELs (1 bp - 8 bp) 193,271 127,173 66,098
Intergenic 122,571 78,538 44,033
Intergenic (Upstream w/in 1 kb) 5,900 5,073 827
Intergenic (Downstream w/in 1 kb) 2,557 1,853 704
Intergenic (Up/Down w/in 1 kb) 126 105 21
Genic 62,117 41,604 20,513
Intron 57,618 37,377 20,241
Non-Coding Exon 277 239 38
5' UTR 594 557 37
3' UTR 249 195 54
Intron Splice Site 749 735 14
Exon Splice Site 771 762 9
Coding Exon 1,859 1,739 120
Frameshift Deletion 1,594 1,533 61
Frameshift Insertion 980 940 40
Non-Frameshift Deletion 23 4 19
Non-Frameshift Insertion 12 5 7
Stop - Gain 21 19 2
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