From: Whole-Genome sequencing and genetic variant analysis of a quarter Horse mare
INDEL Location | Total | Homozygous | Heterozygous |
---|---|---|---|
INDELs (1 bp - 8 bp) | 193,271 | 127,173 | 66,098 |
Intergenic | 122,571 | 78,538 | 44,033 |
Intergenic (Upstream w/in 1 kb) | 5,900 | 5,073 | 827 |
Intergenic (Downstream w/in 1 kb) | 2,557 | 1,853 | 704 |
Intergenic (Up/Down w/in 1 kb) | 126 | 105 | 21 |
Genic | 62,117 | 41,604 | 20,513 |
Intron | 57,618 | 37,377 | 20,241 |
Non-Coding Exon | 277 | 239 | 38 |
5' UTR | 594 | 557 | 37 |
3' UTR | 249 | 195 | 54 |
Intron Splice Site | 749 | 735 | 14 |
Exon Splice Site | 771 | 762 | 9 |
Coding Exon | 1,859 | 1,739 | 120 |
Frameshift Deletion | 1,594 | 1,533 | 61 |
Frameshift Insertion | 980 | 940 | 40 |
Non-Frameshift Deletion | 23 | 4 | 19 |
Non-Frameshift Insertion | 12 | 5 | 7 |
Stop - Gain | 21 | 19 | 2 |