Table 3 Conserved mature-star miRNAs from common bean
From: Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing
miRNA family | Reference miRNA | Sequence (5'- 3') | Length (nt) | Reads | ||||
|---|---|---|---|---|---|---|---|---|
LL | FL | RL | SL | Total | ||||
166 | aly-miR166b* | GGACUGUUGUCUGGCUCGAGG | 21 | 233 | 0 | 5 | 3 | 241 |
aly-miR166g* | GGAAUGUUGUUUGGCUCGAGG | 21 | 38 | 143 | 186 | 257 | 624 | |
zma-miR166a* | GGAAUGUUGUCUGGCUCGGGG | 21 | 26 | 3 | 11 | 7 | 47 | |
gma-miR166a-5p | GGAAUGUUGUCUGGCUCGAGG | 21 | 36866 | 3839 | 6253 | 23902 | 70860 | |
zma-miR166m* | GGAAUGUUGGCUGGCUCGAGG | 21 | 55 | 655 | 50 | 3363 | 4123 | |
167 | ahy-miR167-3p | AGAUCAUGUGGCAGUUUCACC | 21 | 155 | 16 | 84 | 11 | 266 |
168 | aly-miR168a* | CCCGCCUUGCAUCAACUGAAU | 21 | 80 | 22 | 8 | 3 | 113 |
171 | aly-MIR171a* | UAUUGGCCUGGUUCACUCAGA | 21 | 179 | 710 | 1 | 543 | 1433 |
172 | aly-miR172c* | GGAGCAUCAUCAAGAUUCACA | 21 | 10 | 352 | 19 | 1 | 382 |
390 | aly-miR390a* | CGCUAUCCAUCCUGAGUUUCA | 21 | 149 | 524 | 69 | 10 | 752 |
gma-miR390a-3p | CGCUAUCCAUCCUGAGUUUC | 20 | 14 | 3 | 0 | 2 | 19 | |
396 | aly-miR396a* | GUUCAAUAAAGCUGUGGGAAG | 21 | 267 | 306 | 3931 | 791 | 5295 |
482 | gma-miR482a-5p | AGAAUUUGUGGGAAUGGGCUGA | 22 | 0 | 17 | 1 | 1 | 19 |
pvu-miR482* | GGAAUGGGCUGAUUGGGAAGCA | 22 | 1185 | 6 | 440 | 10 | 1641 | |