Table 1 List of annotated BAC clones.
From: Antigen-presenting genes and genomic copy number variations in the Tasmanian devil MHC
| BAC | Accession | Start | End | Strand | Description |
|---|---|---|---|---|---|
| C22M16 | FQ482140 | 24985 | 22341 | - | Proteasome subunit, beta type, 8 |
| 42720 | 30519 | - | Transporter 1, ATP-binding cassette, sub-family B | ||
| 43296 | 46824 | + | Proteasome subunit, beta type, 9 | ||
| 67202 | 64208 | - | MHC Class I antigen Saha-UK | ||
| 98510 | 88331 | - | Transporter 2, ATP-binding cassette, sub-family B | ||
| 125729 | 116120 | - | Peptidase inhibitor 16-like | ||
| C158O23 | FQ482137 | 98067 | 99377 | + | MHC Class I pseudogene |
| C161A10 | FQ482138 | 97718 | 77164 | - | Mitochondrial carrier homolog 1 |
| 122296 | 155379 | + | FYVE, RhoGEF and PH domain containing 2 | ||
| S211H13 | FQ482144 | 67289 | 70233 | + | MHC Class I antigen Saha-UA |
| 118698 | 121642 | + | MHC Class I antigen Saha-UB | ||
| S421K17 | FQ482146 | 67403 | 64222 | - | Transporter 2, ATP-binding cassette, sub-family B pseudogene |
| 36094 | 33148 | - | MHC Class I antigen Saha-UC | ||
| C491I11 | FQ482142 | 8066 | 18154 | + | Ubiquitin specific peptidase 49 |
| 26396 | 24778 | - | Translocase of outer mitochondrial membrane 6 | ||
| 32637 | 30374 | - | Prickle homolog 4 (Drosophila) | ||
| 53046 | 56295 | + | MHC Class I antigen Saha-UD | ||
| 70180 | 88114 | + | Fibroblast growth factor receptor substrate 3 | ||
| 105924 | 114685 | + | Progastricsin (pepsinogen C) | ||
| S50J3 | FQ482147 | 154766 | 172999 | + | Progastricsin (pepsinogen C) pseudogene |
| C120J14 | FQ790236 | 47684 | 38237 | - | MHC Class II DA β chain 1 |
| 119765 | 110505 | - | MHC Class II DA β chain 2 | ||
| C105P19 | FQ790235 | 83441 | 74884 | - | MHC Class II DA β chain 3 |
| 148648 | 135902 | - | Guanylate cyclase activator 1A | ||
| C12G5 | FQ790241 | 13651 | 9537 | - | MHC Class II DA α chain |
| 60582 | 59696 | - | Protein EURL homolog | ||
| 73613 | 71308 | - | Vesicle-associated membrane protein 4-like | ||
| 84027 | 87750 | + | NOTCH4 pseudogene | ||
| 108416 | 112090 | + | Pre-B-cell leukemia homeobox 2 | ||
| 114221 | 117186 | + | Advanced glycosylation end product-specific receptor | ||
| 127655 | 131100 | + | 1-acylglycerol-3-phosphate O-acyltransferase 1 | ||
| 135753 | 133198 | - | Epidermal growth factor-like protein 8 | ||
| 141212 | 138220 | - | Palmitoyl-protein thioesterase 2 | ||
| 148877 | 150447 | + | Proline-rich transmembrane protein 1 |