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Table 1 List of annotated BAC clones.

From: Antigen-presenting genes and genomic copy number variations in the Tasmanian devil MHC

BAC Accession Start End Strand Description
C22M16 FQ482140 24985 22341 - Proteasome subunit, beta type, 8
   42720 30519 - Transporter 1, ATP-binding cassette, sub-family B
   43296 46824 + Proteasome subunit, beta type, 9
   67202 64208 - MHC Class I antigen Saha-UK
   98510 88331 - Transporter 2, ATP-binding cassette, sub-family B
   125729 116120 - Peptidase inhibitor 16-like
C158O23 FQ482137 98067 99377 + MHC Class I pseudogene
C161A10 FQ482138 97718 77164 - Mitochondrial carrier homolog 1
   122296 155379 + FYVE, RhoGEF and PH domain containing 2
S211H13 FQ482144 67289 70233 + MHC Class I antigen Saha-UA
   118698 121642 + MHC Class I antigen Saha-UB
S421K17 FQ482146 67403 64222 - Transporter 2, ATP-binding cassette, sub-family B pseudogene
   36094 33148 - MHC Class I antigen Saha-UC
C491I11 FQ482142 8066 18154 + Ubiquitin specific peptidase 49
   26396 24778 - Translocase of outer mitochondrial membrane 6
   32637 30374 - Prickle homolog 4 (Drosophila)
   53046 56295 + MHC Class I antigen Saha-UD
   70180 88114 + Fibroblast growth factor receptor substrate 3
   105924 114685 + Progastricsin (pepsinogen C)
S50J3 FQ482147 154766 172999 + Progastricsin (pepsinogen C) pseudogene
C120J14 FQ790236 47684 38237 - MHC Class II DA β chain 1
   119765 110505 - MHC Class II DA β chain 2
C105P19 FQ790235 83441 74884 - MHC Class II DA β chain 3
   148648 135902 - Guanylate cyclase activator 1A
C12G5 FQ790241 13651 9537 - MHC Class II DA α chain
   60582 59696 - Protein EURL homolog
   73613 71308 - Vesicle-associated membrane protein 4-like
   84027 87750 + NOTCH4 pseudogene
   108416 112090 + Pre-B-cell leukemia homeobox 2
   114221 117186 + Advanced glycosylation end product-specific receptor
   127655 131100 + 1-acylglycerol-3-phosphate O-acyltransferase 1
   135753 133198 - Epidermal growth factor-like protein 8
   141212 138220 - Palmitoyl-protein thioesterase 2
   148877 150447 + Proline-rich transmembrane protein 1
  1. Genes in the BAC overlapping regions are only shown once. Letters C and S in BAC clone names indicate Cedric's and Spirit's library, respectively