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Table 1 List of annotated BAC clones.

From: Antigen-presenting genes and genomic copy number variations in the Tasmanian devil MHC

BAC

Accession

Start

End

Strand

Description

C22M16

FQ482140

24985

22341

-

Proteasome subunit, beta type, 8

  

42720

30519

-

Transporter 1, ATP-binding cassette, sub-family B

  

43296

46824

+

Proteasome subunit, beta type, 9

  

67202

64208

-

MHC Class I antigen Saha-UK

  

98510

88331

-

Transporter 2, ATP-binding cassette, sub-family B

  

125729

116120

-

Peptidase inhibitor 16-like

C158O23

FQ482137

98067

99377

+

MHC Class I pseudogene

C161A10

FQ482138

97718

77164

-

Mitochondrial carrier homolog 1

  

122296

155379

+

FYVE, RhoGEF and PH domain containing 2

S211H13

FQ482144

67289

70233

+

MHC Class I antigen Saha-UA

  

118698

121642

+

MHC Class I antigen Saha-UB

S421K17

FQ482146

67403

64222

-

Transporter 2, ATP-binding cassette, sub-family B pseudogene

  

36094

33148

-

MHC Class I antigen Saha-UC

C491I11

FQ482142

8066

18154

+

Ubiquitin specific peptidase 49

  

26396

24778

-

Translocase of outer mitochondrial membrane 6

  

32637

30374

-

Prickle homolog 4 (Drosophila)

  

53046

56295

+

MHC Class I antigen Saha-UD

  

70180

88114

+

Fibroblast growth factor receptor substrate 3

  

105924

114685

+

Progastricsin (pepsinogen C)

S50J3

FQ482147

154766

172999

+

Progastricsin (pepsinogen C) pseudogene

C120J14

FQ790236

47684

38237

-

MHC Class II DA β chain 1

  

119765

110505

-

MHC Class II DA β chain 2

C105P19

FQ790235

83441

74884

-

MHC Class II DA β chain 3

  

148648

135902

-

Guanylate cyclase activator 1A

C12G5

FQ790241

13651

9537

-

MHC Class II DA α chain

  

60582

59696

-

Protein EURL homolog

  

73613

71308

-

Vesicle-associated membrane protein 4-like

  

84027

87750

+

NOTCH4 pseudogene

  

108416

112090

+

Pre-B-cell leukemia homeobox 2

  

114221

117186

+

Advanced glycosylation end product-specific receptor

  

127655

131100

+

1-acylglycerol-3-phosphate O-acyltransferase 1

  

135753

133198

-

Epidermal growth factor-like protein 8

  

141212

138220

-

Palmitoyl-protein thioesterase 2

  

148877

150447

+

Proline-rich transmembrane protein 1

  1. Genes in the BAC overlapping regions are only shown once. Letters C and S in BAC clone names indicate Cedric's and Spirit's library, respectively