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Table 2 Reference genome assembly of clinical ovine isolates using simulated MAP S397 genome

From: Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association

  JTC1074 JTC7565
Reference organism MAP S397 MAP S397
Reference length 4,766,015 4,766,015
Consensus length 4,753,502 4,742,737
%Homologya to S397 99.74 99.51
%Homology to K-10 98.79 98.56
Average Coverageb 59.89 62.77
Standard deviation 32.36 34.65
Non-specific matches read countc 1387 1461
Paired read distance distribution 140-360 120-380
No. of SNPs 70 53
  1. aHomology% was calculated as: consensus length divided by reference length and then multiplied by 100
  2. bAverage coverage is the average of all the reads in each area in the consensus sequence
  3. cNon-specific match read counts are those reads that can be matched more than one place in the reference genome and such reads were randomly placed in one of the matched spots