Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association

Table 2 Reference genome assembly of clinical ovine isolates using simulated MAP S397 genome

	JTC1074	JTC7565
Reference organism	MAP S397	MAP S397
Reference length	4,766,015	4,766,015
Consensus length	4,753,502	4,742,737
%Homology^a to S397	99.74	99.51
%Homology to K-10	98.79	98.56
Average Coverage^b	59.89	62.77
Standard deviation	32.36	34.65
Non-specific matches read count^c	1387	1461
Paired read distance distribution	140-360	120-380
No. of SNPs	70	53

^aHomology% was calculated as: consensus length divided by reference length and then multiplied by 100
^bAverage coverage is the average of all the reads in each area in the consensus sequence
^cNon-specific match read counts are those reads that can be matched more than one place in the reference genome and such reads were randomly placed in one of the matched spots

ISSN: 1471-2164