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Table 3 Boundaries and flanking ORFs of aligned segments between MAP K-10 and MAP S397 genomes

From: Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association

  K-10 coordinates by Wynne[28] K-10 coordinates by Li[19] Flanking ORF Approx. size (Kb) Alignment between K-10 and S397
ID Left end Right end Left end Right end Left end Right end   
1 4751793 11164 4748984 11164 IS900 IS_MAP03 and IS1311 92 Forward
2 13889 325818 4197078 3885146 IS_MAP03 and IS1311 No known IS element 312 Forward
3 357239 1424396 3853725 2786561 IS_MAP02 No known IS element 1067 Forward
4 1424397 1627687 2786560 2583268 No known IS element ISmav2 203 Inverted
5 1629051 1828408 2581904 2382587 ISmav2 IS1311 199 Forward
6 1829822 3004096 2381173 1206891 IS1311 IS1311 1174 Inverted
7 3005512 3524059 1205475 686927 IS1311 ISmav2 519 Forward
8 3525433 3737882 685553 473103 ISmav2 No known IS element 212 Inverted
9 3737883 3833853 473102 377132 No known IS element No known IS element 96 Forward
10 3849713 3890501 361272 320484 IS_MAP02 No known IS element 41 Inverted
11 3890502 4098807 320483 112177 No known IS element IS1311 208 Inverted
12 4100223 4176993 110761 33991 IS1311 IS1311 77 Forward
13 4177670 4199835 33287 11158 IS1311 IS1311 22 Inverted
14 4201310 unknown1 4198493 unknown1 IS1311 N/A 562 Inverted