Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association

Table 3 Boundaries and flanking ORFs of aligned segments between MAP K-10 and MAP S397 genomes

	K-10 coordinates by Wynne[28]		K-10 coordinates by Li[19]		Flanking ORF		Approx. size (Kb)	Alignment between K-10 and S397
ID	Left end	Right end	Left end	Right end	Left end	Right end
1	4751793	11164	4748984	11164	IS900	IS_MAP03 and IS1311	92	Forward
2	13889	325818	4197078	3885146	IS_MAP03 and IS1311	No known IS element	312	Forward
3	357239	1424396	3853725	2786561	IS_MAP02	No known IS element	1067	Forward
4	1424397	1627687	2786560	2583268	No known IS element	ISmav2	203	Inverted
5	1629051	1828408	2581904	2382587	ISmav2	IS1311	199	Forward
6	1829822	3004096	2381173	1206891	IS1311	IS1311	1174	Inverted
7	3005512	3524059	1205475	686927	IS1311	ISmav2	519	Forward
8	3525433	3737882	685553	473103	ISmav2	No known IS element	212	Inverted
9	3737883	3833853	473102	377132	No known IS element	No known IS element	96	Forward
10	3849713	3890501	361272	320484	IS_MAP02	No known IS element	41	Inverted
11	3890502	4098807	320483	112177	No known IS element	IS1311	208	Inverted
12	4100223	4176993	110761	33991	IS1311	IS1311	77	Forward
13	4177670	4199835	33287	11158	IS1311	IS1311	22	Inverted
14	4201310	unknown¹	4198493	unknown¹	IS1311	N/A	562	Inverted

ISSN: 1471-2164