Skip to main content

Advertisement

Springer Nature is making SARS-CoV-2 and COVID-19 research free. View research | View latest news | Sign up for updates

Table 2 KEGG functional analysis of candidate rootstock-regulated, fire blight susceptibility-associated transcripts

From: Rootstock-regulated gene expression patterns associated with fire blight resistance in apple

   Whole array Suppl Table 2 Table 3 transcripts Table 5 transcripts p-value >
Pathway KEGG no. Total Exp Obs Exp Obs Exp Obs Suppl Table 2 Table 3 Table 5
Fatty acid metabolism 71 10 0.1 4 n/a n/a n/a n/a 0.001 n/a n/a
Protein processing in endoplasmic reticulum 4141 60 0.8 8 0.3 3 0.3 3 0.001 0.001 0.001
Carbon fixation pathways in prokaryotes 720 10 0.1 3 n/a n/a n/a n/a 0.001 n/a n/a
Peroxisome 4146 30 0.4 5 0.2 1 n/a n/a 0.001 0.05 n/a
Photosynthesis-antenna proteins 196 12 1.5 7 0.7 1 0.7 2 0.001 NS 0.001
Endocytosis 4144 30 0.4 3 0.2 2 0.2 1 0.001 0.001 0.05
Valine, leucine and isoleucine degradation 280 20 0.3 2 n/a n/a n/a n/a 0.001 n/a n/a
Carbon fixation in photosynthetic organisms 710 22 2.8 8 1.3 2 n/a n/a 0.01 NS n/a
Methane metabolism 680 19 2.4 7 1.1 2 n/a n/a 0.01 NS n/a
Spliceosome 3040 95 12.2 3 5.5 1 5.2 1 0.01 NS NS
Arginine and proline metabolism 330 30 0.4 2 n/a n/a n/a n/a 0.01 n/a n/a
Flavonoid biosynthesis 941 13 1.7 5    0.7 2 0.01   NS
Antigen processing and presentation 4612 6 0.8 3 0.3 2 0.3 2 0.05 0.01 0.01
Purine metabolism 230 75 9.6 2 n/a n/a n/a n/a 0.05 n/a n/a
Pentose and glucuronate interconversions 40 10 0.1 1 n/a n/a n/a n/a 0.05 n/a n/a
Indole alkaloid biosynthesis 901 1 0.1 1 n/a n/a n/a n/a 0.05 n/a n/a
Neuroactive ligand-receptor interaction 4080 1 0.1 1 n/a n/a n/a n/a 0.05 n/a n/a
Renin-angiotensin system 4614 1 0.1 1 n/a n/a n/a n/a 0.05 n/a n/a
Benzoate degradation 362 4 0.5 2 n/a n/a 0.3 1 0.05 n/a NS
Fructose and mannose metabolism 51 16 2.1 5 0.9 1 n/a n/a 0.05 NS n/a
Ubiquitin mediated proteolysis 4120 47 6.0 1 n/a n/a 3.2 1 0.05 n/a NS
Cell cycle-yeast 4111 46 5.9 1 n/a n/a 3.1 1 0.05 n/a NS
Phagosome 4145 26 3.3 7 n/a n/a 1.4 3 0.05 n/a NS
NOD-like receptor signaling pathway 4621 3 0.4 1 0.2 1 0.2 1 NS 0.05 NS
  1. NS = not significant, n/a = no transcripts identified matching this pathway.