Table 3 Transcripts in common with those found to have differential expression in apple upon E. amylovora infection by Norelli et al., [11]

APPLE0F000017044/

EG974017

MDC011793.214

plastocyanin-like domain-containing protein

9E-14

early up-regulated

APPLE0FR00078469

APPLE0F000011437/

fibrillarin 1 (FBR1) (FIB1) (SKIP7) identical to fibrillarin 1

1E-59

APPLE0F000051475/

EG974020

MDC019359.48

GI:9965653 from [A. thaliana]; C-terminus identical to SKP1

3E-53

early up-regulated

APPLE0F000020924

interacting partner 7 GI:10716959 from [A. thaliana]

3E-28

APPLE0F000022573

EH009495

MDC009164.88

putative cytochrome c oxidase subunit 5c [Helianthus annuus]

5E-14

up-regulated 1 hpi

APPLE0F000017734/

EH009489

MDC002049.218

leucine-rich repeat transmembrane protein kinase, putative

4E-11

up-regulated 1 hpi

APPLE0F000060312

9E-06

APPLE0F000019504

EH009551

MDC011946.321

L-ascorbate peroxidase 1, cytosolic (APX1

7E-12

up-regulated 1 hpi

APPLE0FR00043470

EH009570

MDC010527.333

Encodes a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.

up-regulated 1 hpi

APPLE0F000017575/

EH009572

MDC015841.261

oxygen-evolving enhancer protein 3, chloroplast, putative

5E-13

up-regulated 1 hpi

APPLE0F000020381

(PSBQ2

7E-11

APPLE0F000015792

EH009577

MDC006495.372

catalase 3 (SEN2)

3E-12

up-regulated 1 hpi

APPLE0F000015821

4E-16

APPLE0F000006776

EH009561/

MDC013772.152

putative strong similarity to plastidic fructose-bisphosphate)

3E-25

up-regulated 1 hpi

EH009491

aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1

APPLE00R00054041

EH009563

MDC008063.227

similar to putative 60S acidic ribosomal protein P0 GB:P50346

4E-32

up-regulated 1 hpi

APPLE0F000022368

EH090785

MDC016063.220

Glycine-rich RNA-binding protein 7 {A. thaliana}

2E-11

up-regulated 12 hpi

APPLE00R00018459

EH090787

MDC002341.180

40S ribosomal protein S27 (ARS27A

2E-17

up-regulated 12 hpi

APPLE0F000016047/

EH090788

MDC013560.291

chlorophyll A-B binding protein 2, chloroplast/LHCII type I

5E-27

up-regulated 12 hpi

APPLE0F000021251

CAB-2/CAB-140 (CAB2B)

APPLE00R00018530

EH090762

MDC009496.462

putative mRNA binding protein precursor (GI:26453355)

1E-22

up-regulated 2 hpi

APPLE0F000021275

EH090763

MDC011225.39

dehydrin ERD10 (Low-temperature-induced protein LTI45) [A. thaliana] SWISS-PROT:P42759

up-regulated 2 hpi

APPLE0F000020273

EH090764

MDC007862.188

heat shock protein 81-4 (HSP81-4) contains Pfam profiles PF02518, PF00183: Hsp90 pro

1E-22

up-regulated 2 hpi

APPLE0F000017683/

EG974803

MDC009596.270

sugar transporter, putative similar to ERD6 protein {A. thaliana}

8E-29

up-regulated 48 and 72 hpi

APPLE0F000019355

1E-33

72 hpi

APPLE0F000015156

EG974779

MDC021689.444

contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family

1E-11

up-reg. 48 and 72 hpi

APPLE0F000018467/

APPLE0F000019900/

APPLE0F000060942/

EG974812

MDC007381.261

cytosolic (GAPC)/NAD-dependent glyceraldehyde-3-phosphate

1E-20

up-reg. 48 and 72 hpi

APPLE0FR00073702/

dehydrogenase

APPLE0FR00045573/

APPLE0F000015746

EG974761

MDC017137.174

ribulose bisphosphate carboxylase small chain 3B/RuBisCO small subunit 3B (RBCS-3B) (ATS3B

8E-20

up-reg. 48 and 72 hpi

APPLE00R00062179

EH034496/

MDC006746.407

conserved hypothetical protein [Corynebacterium efficiens YS-

4E-07

early up-reg., down-,

EG974019

314] mitochondrial 26S ribosomal RNA protein

reg. 2 hpi

APPLE00R00062069/

APPLE00R00062142/

early up-reg., up-reg.

APPLE0FR00063223/

EH009493/

MDC021568.167

3'utr of MDP0000053760 Unknown A. thaliana. protein

3E-12

1 hpi, down-reg. 2

APPLE0FR00072001/

EG974018

hpi,

APPLE0FR00074986

APPLE0F000019494/

EH034531/

MDC008933.302

jasmonate-zim-domain protein 1

up-reg. 1 hpi, down-

APPLE0FR00070531

EH009567

reg. 2 hpi

APPLE0F000015761/

EH034470/

1E-20

APPLE0F000016441/

EH034448/

MDC012615.331

chlorophyll A-B binding protein 2, chloroplast/LHCII type I

3E-70

up-reg. 1 hpi, down-

APPLE0F000017178/

EH009539/

CAB-2/CAB-140 (CAB2B)

1E-20

reg. 2 hpi,

APPLE0F000016322

EH009499

1E-70

EH034678/

EH034677/

EH034635/

up-reg. 1 hpi, down-

APPLE00R00015736/

EH034631/

MDC017026.232

ribulose bisphosphate carboxylase small chain 3B/RuBisCO

4E-26

reg. 1 hpi, down-reg.

APPLE0F000025537

EH034620/

small subunit 3B (RBCS-3B) (ATS3B)

12 hpi, down-reg. 24

EH034600/

hpi, down-reg. 48

EH034581/

hpi,

EH034578/

EH009517/

EH009492

APPLE00R00061494

EH034644

MDC008988.418

ribosomal protein L2 family protein similar to ribosomal protein L2 [Gossypium arboreum] GI:17644114; contains Pfam profile PF03947: Ribosomal Proteins L2, C-terminal domain

4E-07

down-regulated 1 hpi

APPLE00R00016015

EH034651

MDC013883.400

glycosyl hydrolase family 1 protein contains Pfam PF00232: domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor

1E-22

down-regulated 1 hpi

APPLE0F000019334

EH034681

MDC023674.27

expressed protein

4E-25

down-regulated 1 hpi

APPLE0F000015900

EH034690

MDC013694.297

68414.m02538 plastocyanin similar to plastocyanin GI:1865683 from [A. thaliana]

9E-11

down-regulated 1 hpi

EH034668/

APPLE0FR00069028

EH034488/

MDC019115.109

piggyBac transposable element derived 5 [Homo sapiens]

1E+00

down-reg. 1 hpi,

EH034454

down-reg. 2 hpi

APPLE0F000059582

EH034691/

MDC011711.503

elongation factor 1-alpha/EF-1-alpha

1E-81

down-reg. 1 hpi,

EH034556

down-reg. 24 hpi

APPLE0F000021983

EH034459/

MDC004849.508

sodium/calcium exchanger family protein/calcium-binding EF

2E-18

down-regulated 2 hpi

EH034663

hand family protein contains Pfam profiles: PF01699

APPLE0F000017271

EH034459/

MDC004849.509

oxygen-evolving enhancer protein, chloroplast, putative/33 kDa

3E-48

down-regulated 2 hpi

EH034663

subunit of oxygen evolving system of photosystem II,

APPLE0F000022030

EH034485

MDC015890.82

ADP-ribosylation factor, putative similar to DcARF1

3E-26

down-regulated 2 hpi

APPLE0F000018523

EH034540

MDC015915.252

heat shock protein 70, putative/HSP70, putative strong similarity to heat shock protein GI:425194 [Spinacia oleracea]

8E-49

down-regulated 2 hpi

APPLE0F000020112

EH034525

MDC000302.731

ribulose bisphosphate carboxylase small chain 3B/RuBisCO small subunit 3B (RBCS-3B) (ATS3B)

7E-06

down-regulated 2 hpi

APPLE0F000050108/

APPLE0F000061371/

EH034439

MDC021556.182

polyubiquitin (UBQ4) identical to GI:17677

1E-112

down-regulated 2 hpi

APPLE0F000022561

APPLE0F000060823

EH034517

MDC012000.76

heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1)

down-regulated 2 hpi

APPLE0F000017293

EH034563/

MDC021812.77

peroxidase 42 (PER42) (P42) (PRXR1

2E-57

down-reg. 2 hpi,

EH034487

down-reg. 24 hpi

APPLE0F000017691

EH034538

MDC021024.27

phosphatidylinositol-4-phosphate 5-kinase family protein

4E-51

down-reg. 24 hpi

APPLE0FR00045757

EH034536

MDC016554.129

possible 5' utr for Thiamin diphosphate-binding fold (THDP-binding) superfamily protein

down-reg. 24 hpi

APPLE00R00002434/

EH034628

MDC008650.425

germin-like protein (GER3)

1E-62

down-reg. 48 hpi

APPLE0F000049504

9E-08

APPLE0F000018527

EH034604

MDC005688.181

oxygen-evolving enhancer protein, chloroplast, putative/33 kDa subunit of oxygen evolving system of photosystem II

down-reg. 48 hpi

APPLE00R00058028

EH034627

MDC010241.225

putative/L-iditol 2-dehydrogenase, putative similar to NAD-dependent sorbitol dehydrogenase from Malus x domestica

9E-26

down-reg. 48 hpi

APPLE0FR00038628

EH009528

MDC000300.335

No Hits Found

up-regulated 1 hpi

APPLE0F000015847/

EH034662

MDC022487.75

chlorophyll A-B binding protein/LHCII type I (LHB1B1)

5E-31

APPLE0F000016638

4E-40

APPLE0FR00073381

EH034693

MDC000997.260

No Hits Found

APPLE0F000024130

EH034466

MDC004582.94

protochlorophyllide reductase A, chloroplast/PCR A/NADPH-protochlorophyllide oxidoreductase A

5E-9

APPLE0F000059277

EG974791

MDC004462.498

60S ribosomal protein L19 (RPL19C) similar to L19 from several species

4E-41

APPLE0FR00073380

EH034693

MDC000997.260

No Hits Found

APPLE0FR00039729

EH009538

MDC005169.268

No Hits Found

APPLE0FR00036633

EH009530

MDC001354.357

hypothetical protein [Burkholderia fungorum]

.02

Up in sensitive

APPLE0F000061746

EG974808/

MDC022200.129

catechol oxidase activity molecular function Catalysis of the reaction: 2 catechol + O2 metal ion binding molecular function

up-reg. 48 and 72 hpi

EG974767

Interacting selectively with any metal ion. predicted with glimmer

APPLE0F000001556

EH034619

MDC011650.665

expressed protein protein induced upon wounding-A. thaliana

4E-79

down-regulated 48 hpi