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Table 3 Transcripts in common with those found to have differential expression in apple upon E. amylovora infection by Norelli et al., [11]

From: Rootstock-regulated gene expression patterns associated with fire blight resistance in apple

Seq_ID GenBank_Accn Malus Contig BLAST Hit Description evalue SSH Response§
APPLE0F000017044/ EG974017 MDC011793.214 plastocyanin-like domain-containing protein 9E-14 early up-regulated
APPLE0F000011437/    fibrillarin 1 (FBR1) (FIB1) (SKIP7) identical to fibrillarin 1 1E-59  
APPLE0F000051475/ EG974020 MDC019359.48 GI:9965653 from [A. thaliana]; C-terminus identical to SKP1 3E-53 early up-regulated
APPLE0F000020924    interacting partner 7 GI:10716959 from [A. thaliana] 3E-28  
APPLE0F000022573 EH009495 MDC009164.88 putative cytochrome c oxidase subunit 5c [Helianthus annuus] 5E-14 up-regulated 1 hpi
APPLE0F000017734/ EH009489 MDC002049.218 leucine-rich repeat transmembrane protein kinase, putative 4E-11 up-regulated 1 hpi
APPLE0F000060312     9E-06  
APPLE0F000019504 EH009551 MDC011946.321 L-ascorbate peroxidase 1, cytosolic (APX1 7E-12 up-regulated 1 hpi
APPLE0FR00043470 EH009570 MDC010527.333 Encodes a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.   up-regulated 1 hpi
APPLE0F000017575/ EH009572 MDC015841.261 oxygen-evolving enhancer protein 3, chloroplast, putative 5E-13 up-regulated 1 hpi
APPLE0F000020381    (PSBQ2 7E-11  
APPLE0F000015792 EH009577 MDC006495.372 catalase 3 (SEN2) 3E-12 up-regulated 1 hpi
APPLE0F000015821     4E-16  
APPLE0F000006776 EH009561/ MDC013772.152 putative strong similarity to plastidic fructose-bisphosphate) 3E-25 up-regulated 1 hpi
  EH009491   aldolase (EC from Nicotiana paniculata (NPALDP1   
APPLE00R00054041 EH009563 MDC008063.227 similar to putative 60S acidic ribosomal protein P0 GB:P50346 4E-32 up-regulated 1 hpi
APPLE0F000022368 EH090785 MDC016063.220 Glycine-rich RNA-binding protein 7 {A. thaliana} 2E-11 up-regulated 12 hpi
APPLE00R00018459 EH090787 MDC002341.180 40S ribosomal protein S27 (ARS27A 2E-17 up-regulated 12 hpi
APPLE0F000016047/ EH090788 MDC013560.291 chlorophyll A-B binding protein 2, chloroplast/LHCII type I 5E-27 up-regulated 12 hpi
APPLE0F000021251    CAB-2/CAB-140 (CAB2B)   
APPLE00R00018530 EH090762 MDC009496.462 putative mRNA binding protein precursor (GI:26453355) 1E-22 up-regulated 2 hpi
APPLE0F000021275 EH090763 MDC011225.39 dehydrin ERD10 (Low-temperature-induced protein LTI45) [A. thaliana] SWISS-PROT:P42759   up-regulated 2 hpi
APPLE0F000020273 EH090764 MDC007862.188 heat shock protein 81-4 (HSP81-4) contains Pfam profiles PF02518, PF00183: Hsp90 pro 1E-22 up-regulated 2 hpi
APPLE0F000017683/ EG974803 MDC009596.270 sugar transporter, putative similar to ERD6 protein {A. thaliana} 8E-29 up-regulated 48 and 72 hpi
APPLE0F000019355     1E-33 72 hpi
APPLE0F000015156 EG974779 MDC021689.444 contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family 1E-11 up-reg. 48 and 72 hpi
APPLE0F000060942/ EG974812 MDC007381.261 cytosolic (GAPC)/NAD-dependent glyceraldehyde-3-phosphate 1E-20 up-reg. 48 and 72 hpi
APPLE0FR00073702/    dehydrogenase   
APPLE0F000015746 EG974761 MDC017137.174 ribulose bisphosphate carboxylase small chain 3B/RuBisCO small subunit 3B (RBCS-3B) (ATS3B 8E-20 up-reg. 48 and 72 hpi
APPLE00R00062179 EH034496/ MDC006746.407 conserved hypothetical protein [Corynebacterium efficiens YS- 4E-07 early up-reg., down-,
  EG974019   314] mitochondrial 26S ribosomal RNA protein   reg. 2 hpi
APPLE00R00062142/      early up-reg., up-reg.
APPLE0FR00063223/ EH009493/ MDC021568.167 3'utr of MDP0000053760 Unknown A. thaliana. protein 3E-12 1 hpi, down-reg. 2
APPLE0FR00072001/ EG974018     hpi,
APPLE0F000019494/ EH034531/ MDC008933.302 jasmonate-zim-domain protein 1   up-reg. 1 hpi, down-
APPLE0FR00070531 EH009567     reg. 2 hpi
APPLE0F000015761/ EH034470/    1E-20  
APPLE0F000016441/ EH034448/ MDC012615.331 chlorophyll A-B binding protein 2, chloroplast/LHCII type I 3E-70 up-reg. 1 hpi, down-
APPLE0F000017178/ EH009539/   CAB-2/CAB-140 (CAB2B) 1E-20 reg. 2 hpi,
APPLE0F000016322 EH009499    1E-70  
  EH034635/     up-reg. 1 hpi, down-
APPLE00R00015736/ EH034631/ MDC017026.232 ribulose bisphosphate carboxylase small chain 3B/RuBisCO 4E-26 reg. 1 hpi, down-reg.
APPLE0F000025537 EH034620/   small subunit 3B (RBCS-3B) (ATS3B)   12 hpi, down-reg. 24
  EH034600/     hpi, down-reg. 48
  EH034581/     hpi,
APPLE00R00061494 EH034644 MDC008988.418 ribosomal protein L2 family protein similar to ribosomal protein L2 [Gossypium arboreum] GI:17644114; contains Pfam profile PF03947: Ribosomal Proteins L2, C-terminal domain 4E-07 down-regulated 1 hpi
APPLE00R00016015 EH034651 MDC013883.400 glycosyl hydrolase family 1 protein contains Pfam PF00232: domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor 1E-22 down-regulated 1 hpi
APPLE0F000019334 EH034681 MDC023674.27 expressed protein 4E-25 down-regulated 1 hpi
APPLE0F000015900 EH034690 MDC013694.297 68414.m02538 plastocyanin similar to plastocyanin GI:1865683 from [A. thaliana] 9E-11 down-regulated 1 hpi
APPLE0FR00069028 EH034488/ MDC019115.109 piggyBac transposable element derived 5 [Homo sapiens] 1E+00 down-reg. 1 hpi,
  EH034454     down-reg. 2 hpi
APPLE0F000059582 EH034691/ MDC011711.503 elongation factor 1-alpha/EF-1-alpha 1E-81 down-reg. 1 hpi,
  EH034556     down-reg. 24 hpi
APPLE0F000021983 EH034459/ MDC004849.508 sodium/calcium exchanger family protein/calcium-binding EF 2E-18 down-regulated 2 hpi
  EH034663   hand family protein contains Pfam profiles: PF01699   
APPLE0F000017271 EH034459/ MDC004849.509 oxygen-evolving enhancer protein, chloroplast, putative/33 kDa 3E-48 down-regulated 2 hpi
  EH034663   subunit of oxygen evolving system of photosystem II,   
APPLE0F000022030 EH034485 MDC015890.82 ADP-ribosylation factor, putative similar to DcARF1 3E-26 down-regulated 2 hpi
APPLE0F000018523 EH034540 MDC015915.252 heat shock protein 70, putative/HSP70, putative strong similarity to heat shock protein GI:425194 [Spinacia oleracea] 8E-49 down-regulated 2 hpi
APPLE0F000020112 EH034525 MDC000302.731 ribulose bisphosphate carboxylase small chain 3B/RuBisCO small subunit 3B (RBCS-3B) (ATS3B) 7E-06 down-regulated 2 hpi
APPLE0F000061371/ EH034439 MDC021556.182 polyubiquitin (UBQ4) identical to GI:17677 1E-112 down-regulated 2 hpi
APPLE0F000060823 EH034517 MDC012000.76 heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1)   down-regulated 2 hpi
APPLE0F000017293 EH034563/ MDC021812.77 peroxidase 42 (PER42) (P42) (PRXR1 2E-57 down-reg. 2 hpi,
  EH034487     down-reg. 24 hpi
APPLE0F000017691 EH034538 MDC021024.27 phosphatidylinositol-4-phosphate 5-kinase family protein 4E-51 down-reg. 24 hpi
APPLE0FR00045757 EH034536 MDC016554.129 possible 5' utr for Thiamin diphosphate-binding fold (THDP-binding) superfamily protein   down-reg. 24 hpi
APPLE00R00002434/ EH034628 MDC008650.425 germin-like protein (GER3) 1E-62 down-reg. 48 hpi
APPLE0F000049504     9E-08  
APPLE0F000018527 EH034604 MDC005688.181 oxygen-evolving enhancer protein, chloroplast, putative/33 kDa subunit of oxygen evolving system of photosystem II   down-reg. 48 hpi
APPLE00R00058028 EH034627 MDC010241.225 putative/L-iditol 2-dehydrogenase, putative similar to NAD-dependent sorbitol dehydrogenase from Malus x domestica 9E-26 down-reg. 48 hpi
APPLE0FR00038628 EH009528 MDC000300.335 No Hits Found   up-regulated 1 hpi
APPLE0F000015847/ EH034662 MDC022487.75 chlorophyll A-B binding protein/LHCII type I (LHB1B1) 5E-31  
APPLE0F000016638     4E-40  
APPLE0FR00073381 EH034693 MDC000997.260 No Hits Found   
APPLE0F000024130 EH034466 MDC004582.94 protochlorophyllide reductase A, chloroplast/PCR A/NADPH-protochlorophyllide oxidoreductase A 5E-9  
APPLE0F000059277 EG974791 MDC004462.498 60S ribosomal protein L19 (RPL19C) similar to L19 from several species 4E-41  
APPLE0FR00073380 EH034693 MDC000997.260 No Hits Found   
APPLE0FR00039729 EH009538 MDC005169.268 No Hits Found   
APPLE0FR00036633 EH009530 MDC001354.357 hypothetical protein [Burkholderia fungorum] .02  
Up in sensitive      
APPLE0F000061746 EG974808/ MDC022200.129 catechol oxidase activity molecular function Catalysis of the reaction: 2 catechol + O2 metal ion binding molecular function   up-reg. 48 and 72 hpi
  EG974767   Interacting selectively with any metal ion. predicted with glimmer   
APPLE0F000001556 EH034619 MDC011650.665 expressed protein protein induced upon wounding-A. thaliana 4E-79 down-regulated 48 hpi
  1. § SSH response corresponds to the change in expression after infection.
  2. Bold text corresponds to genes that are phosphorylated upon infection.
  3. Italicized text corresponds to genes that were also identified as differentially expressed upon infection by Baldo et al., [12].
  4. Underlined text corresponds to genes that were also identified as differentially expressed upon infection by Sarowar et al., [13].