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Table 4 Transcripts in common with those found to have differential expression in apple upon E. amylovora infection by Baldo et al., [12]

From: Rootstock-regulated gene expression patterns associated with fire blight resistance in apple

SEQ_ID

GenBank_Accn

Malus Contig BLAST Hit

Description

evalue

cDNA-AFLP response§

APPLE0F000017734/

EX982051

MDC002049.218

leucine-rich repeat transmembrane protein kinase, putative"

4E-11

up-regulated 2

APPLE0F000060312

   

9E-06

hpi in M.26

APPLE00R00062069/

     

APPLE00R00062142/

     

APPLE0FR00063223/

EX982063

MDC021568.167

235aa long hypothetical protein [Pyrococcus horikoshii]

3E-12

up-regulated 2

APPLE0FR00072001/

  

hypothetical protein [Deinococcus radiodurans]

5E-11

hpi in M.26

APPLE0FR00074986

     

APPLE00R00062069/

     

APPLE00R00062142/

     

APPLE0FR00063223/

EX982064

MDC021568.167

235aa long hypothetical protein [Pyrococcus horikoshii]

3E-12

down-regulated

APPLE0FR00072001/

  

hypothetical protein [Deinococcus radiodurans]

5E-11

2 hpi in M.26

APPLE0FR00074986

     

APPLE00R00062069/

     

APPLE00R00062142/

     

APPLE0FR00063223/

EX982070

MDC021568.167

235aa long hypothetical protein [Pyrococcus horikoshii]

3E-12

up-regulated 2

APPLE0FR00063223/

  

hypothetical protein [Deinococcus radiodurans]

5E-11

& 48 hpi

APPLE0FR00072001/

    

in M.26

APPLE0FR00074986

     

APPLE0F000062056

EX982066

MDC001431.265

hypothetical protein [Oenothera elata subsp. hookeri]

9E-18

up-regulated 2 hpi in G-41

APPLE0FR00045573/

EY437146

MDC005648.389

  

up-regulated 48

APPLE0FR00073702

    

hpi in G-41

APPLE0F000020631/

EX982080

MDC005535.336

invertase/pectin methylesterase inhibitor family protein similar to pectinesterase from Arabidosis thaliana

2E-19

up-regulated 48 hpi in G-41

APPLE0F000016328/

  

plasma membrane intrinsic protein, putative very strong

7E-57

 

APPLE0FR00076854/

EX982085

MDC003306.225

similarity to plasma membrane intrinsic protein (SIMIP)

 

up-regulated 48

APPLE0FR00076855

  

[Arabidopsis thaliana] GI:2306917"

 

hpi in G-41

APPLE00R00015876/

   

3E-19

 

APPLE0F000019554/

   

4E-11

 

APPLE0F000021355/

EX982096

MDC012593.380

chlorophyll A-B binding protein (LHCB2:4) nearly

7E-16

up-regulated 48

APPLE0F000024114/

  

identical to Lhcb2 protein [Arabidopsis thaliana]

5E-06

hpi in G-41

APPLE0FR00036952/

  

GI:4741950

  

APPLE0FR00037537

     

APPLE0F000062056

EX982108

MDC001431.265

hypothetical protein [Oenothera elata subsp. hookeri] 3' UTR of MDP499035

9E-18

down-regulated 48 hpi in G-41

  1. § cDNA-AFLP response corresponds to the change in expression after infection
  2. Bold text corresponds to genes that are phosphorylated upon infection
  3. Italicized text corresponds to genes that were also identified as differentially expressed upon infection by Norelli et al., [11]
  4. Underlined text corresponds to genes that were also identified as differentially expressed upon infection by Sarowar et al., [13].
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BMC Genomics

ISSN: 1471-2164

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