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Table 4 Transcripts in common with those found to have differential expression in apple upon E. amylovora infection by Baldo et al., [12]

From: Rootstock-regulated gene expression patterns associated with fire blight resistance in apple

SEQ_ID GenBank_Accn Malus Contig BLAST Hit Description evalue cDNA-AFLP response§
APPLE0F000017734/ EX982051 MDC002049.218 leucine-rich repeat transmembrane protein kinase, putative" 4E-11 up-regulated 2
APPLE0F000060312     9E-06 hpi in M.26
APPLE00R00062069/      
APPLE00R00062142/      
APPLE0FR00063223/ EX982063 MDC021568.167 235aa long hypothetical protein [Pyrococcus horikoshii] 3E-12 up-regulated 2
APPLE0FR00072001/    hypothetical protein [Deinococcus radiodurans] 5E-11 hpi in M.26
APPLE0FR00074986      
APPLE00R00062069/      
APPLE00R00062142/      
APPLE0FR00063223/ EX982064 MDC021568.167 235aa long hypothetical protein [Pyrococcus horikoshii] 3E-12 down-regulated
APPLE0FR00072001/    hypothetical protein [Deinococcus radiodurans] 5E-11 2 hpi in M.26
APPLE0FR00074986      
APPLE00R00062069/      
APPLE00R00062142/      
APPLE0FR00063223/ EX982070 MDC021568.167 235aa long hypothetical protein [Pyrococcus horikoshii] 3E-12 up-regulated 2
APPLE0FR00063223/    hypothetical protein [Deinococcus radiodurans] 5E-11 & 48 hpi
APPLE0FR00072001/      in M.26
APPLE0FR00074986      
APPLE0F000062056 EX982066 MDC001431.265 hypothetical protein [Oenothera elata subsp. hookeri] 9E-18 up-regulated 2 hpi in G-41
APPLE0FR00045573/ EY437146 MDC005648.389    up-regulated 48
APPLE0FR00073702      hpi in G-41
APPLE0F000020631/ EX982080 MDC005535.336 invertase/pectin methylesterase inhibitor family protein similar to pectinesterase from Arabidosis thaliana 2E-19 up-regulated 48 hpi in G-41
APPLE0F000016328/    plasma membrane intrinsic protein, putative very strong 7E-57  
APPLE0FR00076854/ EX982085 MDC003306.225 similarity to plasma membrane intrinsic protein (SIMIP)   up-regulated 48
APPLE0FR00076855    [Arabidopsis thaliana] GI:2306917"   hpi in G-41
APPLE00R00015876/     3E-19  
APPLE0F000019554/     4E-11  
APPLE0F000021355/ EX982096 MDC012593.380 chlorophyll A-B binding protein (LHCB2:4) nearly 7E-16 up-regulated 48
APPLE0F000024114/    identical to Lhcb2 protein [Arabidopsis thaliana] 5E-06 hpi in G-41
APPLE0FR00036952/    GI:4741950   
APPLE0FR00037537      
APPLE0F000062056 EX982108 MDC001431.265 hypothetical protein [Oenothera elata subsp. hookeri] 3' UTR of MDP499035 9E-18 down-regulated 48 hpi in G-41
  1. § cDNA-AFLP response corresponds to the change in expression after infection
  2. Bold text corresponds to genes that are phosphorylated upon infection
  3. Italicized text corresponds to genes that were also identified as differentially expressed upon infection by Norelli et al., [11]
  4. Underlined text corresponds to genes that were also identified as differentially expressed upon infection by Sarowar et al., [13].