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Table 5 Candidate transcripts whose expression levels correlated with fire blight resistance in a population of trees segregating for fire blight susceptibility (regression analysis).

From: Rootstock-regulated gene expression patterns associated with fire blight resistance in apple

 

E. amylovora strain

   

Seq_ID

E2002a

Ea273

4001a

hit

Description

evalue

APPLE0F000021750

 

X

X

At3g54020

inositol phosphorylceramide synthase 2 -

3E-19

APPLE0F000017942

 

X

X

At5g17420

cellulose synthase, catalytic subunit (IRX3) identical to gi:5230423

5E-08

APPLE00R00017800

X

 

X

At5g02570

histone H2B, putative similar to histone H2B-2 Lycopersicon esculentum

2E-24

APPLE0F000016970

X

  

At3g01090

Snf1-related protein kinase (KIN10) (SKIN10)

2E-14

APPLE0F000020273*

X

  

At5g56000

heat shock protein 81-4 (HSP81-4)

 

APPLE0FR00077763

X

  

No Hits Found

 

1E-34

APPLE0F000025563

X

  

At3g47520

malate dehydrogenase [NAD], chloroplast (MDH) identical to chloroplast NAD-malate dehydrogenase [A. thaliana] GI:3256066

9E-30

APPLE0FR00039135

X

  

No Hits Found

  

APPLE0F000018055

 

X

 

At3g22550

similar to senescence-associated protein SAG102

4E-41

APPLE0FR00077391

 

X

 

No Hits Found

 

1E+00

APPLE0F000059277

 

X

 

At4g02230

60S ribosomal protein L19

 

APPLE0FR00069907

 

X

 

No Hits Found

 

2E-18

APPLE0F000018558

 

X

 

At3g47470

chlorophyll A-B binding protein 4, LHCI type III CAB-4 (CAB4)

1E-22

APPLE0FR00078469

 

X

 

No Hits Found

  

APPLE0FR00072723

 

X

 

gb|AAD45359|AF161252_1

cycloidea-like protein [Linaria vulgaris]

2E-06

APPLE0FR00048629

 

X

 

emb|CAG59326||

unnamed protein product [Candida glabrata CBS138] ref|XP_4463991| unnamed protein product [Candida glabrata]

2.E-02

APPLE0FR00038610

 

X

 

No Hits Found

  

APPLE00R00062246

 

X

 

dbj|BAB1270|

P0671B1122 [Oryza sativa (japonica cultivar-group)]

2.E-06

APPLE0F000021761

 

X

 

At1g72370

40S ribosomal protein SA (RPSaA) identical to laminin receptor-like protein GB:U01955 [A thaliana]

9.E-20

APPLE0FR00036516

  

X

gb|EAA23003|

Ribosomal protein L31e, putative [Plasmodium yoelii yoelii]

2E-06

APPLE0FR00076821

  

X

No Hits Found

  

APPLE0FR00076762

  

X

No Hits Found

  

APPLE0F000016441*

  

X

At1g29930

chlorophyll A-B binding protein 2, LHCII type I CAB-2/CAB-140

3.E-70

APPLE0F000019498

  

X

At2g42210

mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein

8E-07

APPLE0F000018523*

  

X

At3g12580

heat shock protein 70, putative/HSP70, putative

8E-49

APPLE00R00018643

  

X

At3g27690

chlorophyll A-B binding protein (LHCB2:4)

4E-22

APPLE0F000020073

  

X

At2g34690

expressed protein

3E-14

APPLE0F000021409

  

X

At3g05890

hydrophobic protein (RCI2B)/low temperature and salt responsive protein (LTI6B)

5E-10

APPLE0FR00037149

  

X

No Hits Found

  

APPLE0FR00080491

  

X

gb|AAK07949|AF318573_29

unknown [Bovine herpesvirus 4]

1E+00

APPLE0F000025192

  

X

At3g56900

aladin-related/adracalin-related weak similarity to SP|Q9NRG9

3E-16

APPLE0F000060354

  

X

At5g02120

68418m00133 thylakoid membrane one helix protein (OHP)

1E+00

APPLE0F000001282

  

X

At4g38920

vacuolar ATP synthase 16 kDa proteolipid subunit 3/V-ATPase

1.E-34

APPLE0F000058071

  

X

At1g75780

tubulin beta-1 chain (TUB1) nearly identical to SP|P12411

2E-02

APPLE0F000020583

  

X

At2g34250

protein transport protein sec61, putative similar to PfSec61 [Plasmodium falciparum] GI:3057044

6E-34

APPLE0F000019736

  

X

At5g39740

60S ribosomal protein L5 (RPL5B) ribosomal protein L5, rice

2E-02

APPLE0FR00045816

  

X

No Hits Found

  

APPLE0FR00036516

  

X

gb|EAA23003|

Ribosomal protein L31e, putative [Plasmodium yoelii yoelii]

1E-16

APPLE0F000018069

  

X

At5g09810

actin 7 (ACT7)/actin 2 identical to SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}

4E-72

APPLE0F000026657 #

 

X

 

At1g04540

C2 domain-containing protein low similarity to cold-regulated gene SRC2 [Glycine max]

3E-11

APPLE0FR00032503#

 

X

 

ref|XP_032996|

similar to KIAA0819 protein [Homo sapiens]

3E-01

APPLE0F000061746#

X

  

sp|P43309|PPO_MALDO

Polyphenol oxidase, chloroplast precursor (PPO) (Catechol oxidase)

0E+00

  1. X = an un-adjusted p value of less than 0.05 for the analysis
  2. * Transcripts also found in Table 3
  3. # Transcripts less abundant in plants with low susceptibility to fire blight
  4. Underlined text corresponds to genes that were also identified as differentially expressed upon infection by Sarowar et al., [13].