Genome wide expression profiling of two accession of G. herbaceum L. in response to drought

BMC Genomics

Table 2 Summary of 454 transcriptome sequencing data generated for Vagad and RAHS-14 of G. herbaceum leaves transcriptome and assembly

Parameters	Vagad	RAHS-14
Total reads (overlap size of 100 bp and 96% identity)^a	85368	56354
Total contigs (100 bp or greater)^b	11439	6313
Singleton	24087	20780
Exemplar	31244	23155
Average length of contigs	350 bp	180 bp
Number of contigs with greater than 500 bp	946	705
^cNumber of genes with significant hits in NCBI NR database	10772	10408
^dNumber of genes with significant hits in cotton EST database	16301	13822

^aTotal number of reads separated for both transcriptome libraries. ^bContigs generated by CAP3 assembly. ^cContigs showing significant hits (evalue 10^-10 and ≥ 50% overlap) in the NCBI database. ^dContigs showing significant hits (e value 10^-10, and ≥ 50% alignment of either the query or the subject) in the cotton EST database

ISSN: 1471-2164