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Figure 6 | BMC Genomics

Figure 6

From: A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses

Figure 6

Prediction of the extended regulatory network of genes that are negatively correlated with BvRAV1-like. The network was based on analysis of homologous Arabidopsis proteins and constructed using AraNet at http://www.functionalnet.org/aranet Red nodes are unknown, yellow nodes are associated with reproductive growth; grey node is associated with protein modification; dark blue node with histone modification and the light blue node with hormonal signalling. White nodes with red outline represent loci of known genes with GO terms associated with processes including cold regulated biosynthesis (MTO3); amino acid/protein transport (PEX7, CAT9); translation, rRNA processing/biogenesis (EIF3C, IMP4, HD1, NRPA2, APG3, NAP570; ethylene induced biosynthesis (SAM1) embryonic development leading to seed dormancy (ARP1, RPE) and cell wall biogenesis (DGL1). MTO3 = Methionin Over-Accumulator 3; PEX7 = Peroxin 7; CAT9 = Cationic amino Acid Transporter 9; EIF3C = Eukaryotic translation initiation Factor 3 C; HD1 = Histone Deacetylase 1; NRPA2 = DNA binding/DNA-directed RNA polymerase/ribonucleoside binding; APG3 = Albino and Pale Green; SAM1 = S-Adenosylmethionine Synthetase 1; ARP1 = Arabidopsis Ribosomal Protein 1, RPE = Ribulose Phospate 3-Epimerase; DGL1 = dolichyl-diphosphooligosaccharide-protein glycotransferase.

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