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Table 1 BvRAV1-like transcript locus together with associated negatively regulated transcript locus IDs together with their best matched homologous Arabidopsis gene loci and their annotations

From: A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses

Transcript locus ID Arabidopsis locus ID BLASTX p-values Arabidopsis locus annotations
29609 AT1G13260.1 4 × 10-60 RAV1, EDF4 | related to ABI3/VP1 1 | chr1:4542386-4543420 FORWARD LENGTH = 344
1313 AT5G63660.1 1 × 10-25 LCR74, PDF2.5 | Scorpion toxin-like knottin superfamily protein | chr5:25485692-25486062 FORWARD LENGTH = 73
5840 AT2G45640.1 5 × 10-45 SAP18, ATSAP18 | SIN3 associated polypeptide P18 | chr2:18799881-18801323 REVERSE LENGTH = 152
2345 AT3G42170.1 4 × 10-60 BED zinc finger;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH = 696
14853 AT3G58690.1 8 × 10-145 Protein kinase superfamily protein | chr3:21709369-21711246 FORWARD LENGTH = 400
14886 AT1G80480.1 1 × 10-54 PTAC17 | plastid transcriptionally active 17 | chr1:30258272-30260570 REVERSE LENGTH = 444
25243 AT5G63090.2 6 × 10-59 LOB | Lateral organ boundaries (LOB) domain family protein | chr5:25308723-25309283 REVERSE LENGTH = 186
2141 AT5G14450.1 2 × 10-89 GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:4658488-4660034 FORWARD LENGTH = 389
18419 AT5G19300.1 6 × 10-119 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). | chr5:6495593-6497987 FORWARD LENGTH = 398
12175 AT1G69830.1 5 × 10-172 ATAMY3, AMY3 | alpha-amylase-like 3 | chr1:26288518-26293003 REVERSE LENGTH = 887
98654 AT1G16070.2 2 × 10-106 AtTLP8, TLP8 | tubby like protein 8 | chr1:5511899-5513779 REVERSE LENGTH = 398
32761 AT1G56580.1 8 × 10-41 SVB | Protein of unknown function, DUF538 | chr1:21198402-21198902 REVERSE LENGTH = 166
27453 AT5G61800.1 3 × 10-67 Pentatricopeptide repeat (PPR) superfamily protein | chr5:24830054-24831553 REVERSE LENGTH = 499
6330 AT4G25720.1 1 × 10-19 ATQC, QC, QCT | glutaminyl cyclase | chr4:13099929-13102470 REVERSE LENGTH = 320
19953 AT1G64570.1 5 × 10-10 DUO3 | Homeodomain-like superfamily protein | chr1:23978868-23983925 FORWARD LENGTH = 1239
12524 AT5G59310.1 2 × 10-27 LTP4 | lipid transfer protein 4 | chr5:23925296-23925772 REVERSE LENGTH = 112
17933 AT4G26000.1 9 × 10-104 PEP | RNA-binding KH domain-containing protein | chr4:13197280-13199539 FORWARD LENGTH = 495
269 AT5G23850.1 0 Arabidopsis thaliana protein of unknown function (DUF821) | chr5:8038126-8040741 FORWARD LENGTH = 542
24056 AT2G26680.1 3 × 10-100 CONTAINS InterPro DOMAIN/s: Methyltransferase FkbM (InterPro:IPR006342); Has 1073 Blast hits to 1073 proteins in 243 species: Archae - 45; Bacteria - 509; Metazoa - 0; Fungi - 4; Plants - 60; Viruses - 4; Other Eukaryotes - 451 (source: NCBI BLink). | chr2:11344003-11345288 REVERSE LENGTH = 319
6070 AT3G28910.1 3 × 10-84 ATMYB30, MYB30 | myb domain protein 30 | chr3:10911443-10912856 FORWARD LENGTH = 323
24826 AT3G07800.1 2 × 10-85 Thymidine kinase | chr3:2489944-2490935 REVERSE LENGTH = 238