TY - JOUR AU - Opgen-Rhein, R. AU - Strimmer, K. PY - 2007 DA - 2007// TI - From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data JO - BMC Syst Biol VL - 1 UR - https://doi.org/10.1186/1752-0509-1-37 DO - 10.1186/1752-0509-1-37 ID - Opgen-Rhein2007 ER - TY - JOUR AU - Shimamura, T. AU - Imoto, S. AU - Yamaguchi, R. AU - Fujita, A. AU - Nagasaki, M. AU - Miyano, S. PY - 2009 DA - 2009// TI - Recursive regularization for inferring gene networks from time-course gene expression profiles JO - BMC Syst Biol VL - 3 UR - https://doi.org/10.1186/1752-0509-3-41 DO - 10.1186/1752-0509-3-41 ID - Shimamura2009 ER - TY - JOUR AU - Fujita, A. AU - Sato, J. R. AU - Kojima, K. AU - Gomes, L. R. AU - Nagasaki, M. AU - Sogayar, M. C. AU - Miyano, S. PY - 2010 DA - 2010// TI - Identification of Granger causality between gene sets JO - Journal of Bioinformatics and Computational Biology VL - 8 UR - https://doi.org/10.1142/S0219720010004860 DO - 10.1142/S0219720010004860 ID - Fujita2010 ER - TY - CHAP AU - Beal, M. J. PY - 2003 DA - 2003// TI - Variational algorithms for approximate Bayesian inference BT - PhD thesis PB - University College London CY - Gatsby Computational Neuroscience Unit ID - Beal2003 ER - TY - JOUR AU - Yamaguchi, R. AU - Imoto, S. AU - Yamauchi, M. AU - Nagasaki, M. AU - Shimamura, T. AU - Hatanaka, Y. AU - Ueno, K. AU - Higuchi, T. AU - Gotoh, N. AU - Miyano, S. PY - 2008 DA - 2008// TI - Predicting differences in gene regulatory systems by state space models JO - Genome Inform VL - 21 ID - Yamaguchi2008 ER - TY - JOUR AU - Shiraishi, Y. AU - Kimura, S. AU - Okada, M. PY - 2010 DA - 2010// TI - Inferring cluster-based networks from differently stimulated multiple time-course gene expression data JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq094 DO - 10.1093/bioinformatics/btq094 ID - Shiraishi2010 ER - TY - JOUR AU - Perrin, B. E. AU - Ralaivola, L. AU - Mazurie, A. AU - Bottani, S. AU - Mallet, J. AU - d'Alché Buc, F. PY - 2003 DA - 2003// TI - Gene networks inference using dynamic Bayesian networks JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg1071 DO - 10.1093/bioinformatics/btg1071 ID - Perrin2003 ER - TY - JOUR AU - Lèbre, S. PY - 2009 DA - 2009// TI - Inferring dynamic genetic networks with low order independencies JO - Stat Appl Genet Mol Biol VL - 8 ID - Lèbre2009 ER - TY - JOUR AU - Bar-Joseph, Z. AU - Gerber, G. AU - Simon, I. AU - Gifford, D. K. AU - Jaakkola, T. S. PY - 2003 DA - 2003// TI - Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes JO - Proc Natl Acad Sci U S A VL - 100 UR - https://doi.org/10.1073/pnas.1732547100 DO - 10.1073/pnas.1732547100 ID - Bar-Joseph2003 ER - TY - JOUR AU - Kojima, K. AU - Yamaguchi, R. AU - Imoto, S. AU - Yamauchi, M. AU - Nagasaki, M. AU - Shimamura, T. AU - Ueno, K. AU - Higuchi, T. AU - Gotoh, N. AU - Miyano, S. PY - 2010 DA - 2010// TI - A state space representation of VAR models with sparse learning for dynamic gene networks JO - Genome Inform VL - 22 ID - Kojima2010 ER - TY - JOUR AU - Yoshida, R. AU - West, M. PY - 2010 DA - 2010// TI - Bayesian learning in sparse graphical factor models via variational mean-field annealing JO - J Mach Learn Res VL - 11 ID - Yoshida2010 ER - TY - JOUR AU - Rose, K. PY - 1998 DA - 1998// TI - Deterministic annealing for clustering, compression, classication, regression, and related optimization problems JO - Proceedings of the IEEE VL - 86 UR - https://doi.org/10.1109/5.726788 DO - 10.1109/5.726788 ID - Rose1998 ER - TY - JOUR AU - Ueda, N. PY - 1998 DA - 1998// TI - Deterministic annealing EM algorithm JO - Neural Networks VL - 11 UR - https://doi.org/10.1016/S0893-6080(97)00133-0 DO - 10.1016/S0893-6080(97)00133-0 ID - Ueda1998 ER - TY - CHAP AU - Itaya, Y. AU - Zen, H. AU - Nankaku, Y. AU - Miyajima, C. AU - Tokuda, K. AU - Kitamura, T. PY - 2004 DA - 2004// TI - Deterministic annealing EM algorithm in parameter estimation for acoustic model BT - The 8th International Conference on Spoken Language Processing ID - Itaya2004 ER - TY - JOUR AU - Ruoss, S. J. AU - Hartmann, T. AU - Caughey, G. H. PY - 1991 DA - 1991// TI - Mast cell tryptase is a mitogen for cultured fibroblasts JO - J Clin Invest VL - 88 UR - https://doi.org/10.1172/JCI115330 DO - 10.1172/JCI115330 ID - Ruoss1991 ER - TY - JOUR AU - Kwon, M. AU - Hanna, E. AU - Lorang, D. AU - Quick, J. S. AU - He, M. AU - Adem, A. AU - Stevenson, C. AU - Chung, J. AU - Hewitt, S. M. AU - Zudaire, E. AU - Esposito, D. AU - Cuttitta, F. AU - Libutti, S. K. PY - 2008 DA - 2008// TI - Functional characterization of filamin A interacting protein 1-like, a novel candidate for antivascular cancer therapy JO - Cancer Res VL - 68 UR - https://doi.org/10.1158/0008-5472.CAN-08-1087 DO - 10.1158/0008-5472.CAN-08-1087 ID - Kwon2008 ER - TY - JOUR AU - Downing, J. R. PY - 2009 DA - 2009// TI - Can treating the SYK cell cure leukemia? JO - Cancer Cell VL - 16 UR - https://doi.org/10.1016/j.ccr.2009.09.020 DO - 10.1016/j.ccr.2009.09.020 ID - Downing2009 ER - TY - JOUR AU - Wang, C. AU - Lishner, M. AU - Minden, M. D. AU - McCulloch, E. A. PY - 1990 DA - 1990// TI - The effects of leukemia inhibitory factor (LIF) on the blast stem cells of acute myeloblastic leukemia JO - Leukemia VL - 4 ID - Wang1990 ER - TY - JOUR AU - Heikema, A. P. AU - Bergman, M. P. AU - Crocker, P. R. AU - Gilbert, M. AU - Samsom, J. N. AU - van Wamel, W. J. AU - Endtz, H. P. AU - van Belkum, A. PY - 2010 DA - 2010// TI - Characterization of the specific interaction between sialoadhesin and sialylated Campylobacter jejuni lipooligosaccharides JO - Infect Immun VL - 78 UR - https://doi.org/10.1128/IAI.01273-09 DO - 10.1128/IAI.01273-09 ID - Heikema2010 ER - TY - JOUR AU - Pasonen-Seppänen, S. AU - Karvinen, S. AU - Törrönen, K. AU - Hyttinen, J. M. AU - Jokela, T. AU - Lammi, M. J. AU - Tammi, M. I. AU - Tammi, R. PY - 2003 DA - 2003// TI - EGF upregulates, whereas TGF-beta downregulates, the hyaluronan synthases Has2 and Has3 in organotypic keratinocyte cultures: correlations with epidermal proliferation and differentiation JO - J Invest Dermatol VL - 120 UR - https://doi.org/10.1046/j.1523-1747.2003.12249.x DO - 10.1046/j.1523-1747.2003.12249.x ID - Pasonen-Seppänen2003 ER - TY - JOUR AU - Mandinova, A. AU - Kolev, V. AU - Neel, V. AU - Hu, B. AU - Stonely, W. AU - Lieb, J. AU - Wu, X. AU - Colli, C. AU - Han, R. AU - Pazin, M. J. AU - Ostano, P. AU - Dummer, R. AU - Brissette, J. L. AU - Dotto, G. P. PY - 2009 DA - 2009// TI - A positive FGFR3/FOXN1 feedback loop underlies benign skin keratosis versus squamous cell carcinoma formation in humans JO - J Clin Invest VL - 119 UR - https://doi.org/10.1172/JCI38543 DO - 10.1172/JCI38543 ID - Mandinova2009 ER - TY - JOUR AU - Zhen, G. AU - Park, S. W. AU - Nguyenvu, L. T. AU - Rodriguez, M. W. AU - Barbeau, R. AU - Paquet, A. C. AU - Erle, D. J. PY - 2007 DA - 2007// TI - IL-13 and epidermal growth factor receptor have critical but distinct roles in epithelial cell mucin production JO - Am J Respir Cell Mol Biol VL - 36 UR - https://doi.org/10.1165/rcmb.2006-0180OC DO - 10.1165/rcmb.2006-0180OC ID - Zhen2007 ER - TY - JOUR AU - Lai, H. Y. AU - Rogers, D. F. PY - 2010 DA - 2010// TI - Mucus hypersecretion in asthma: intracellular signaling pathways as targets for pharmacotherapy JO - Curr Opin Allergy Clin Immunol VL - 10 UR - https://doi.org/10.1097/ACI.0b013e328334643a DO - 10.1097/ACI.0b013e328334643a ID - Lai2010 ER -