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Table 1 Enumeration of the values of Z i , Z j and X ij

From: CMRF: analyzing differential gene regulation in two group perturbation experiments

S Ai

S Bi

S Aj

S Bj

Z i

Z j

X ij

DE

DE

DE

DE

1

1

1

DE

DE

DE

EE

1

2

2

DE

DE

EE

DE

1

3

3

DE

DE

EE

EE

1

4

4

DE

EE

DE

DE

2

1

5

DE

EE

DE

EE

2

2

6

DE

EE

EE

DE

2

3

7

DE

EE

EE

EE

2

4

8

EE

DE

DE

DE

3

1

9

EE

DE

DE

EE

3

2

10

EE

DE

EE

DE

3

3

11

EE

DE

EE

EE

3

4

12

EE

EE

DE

DE

4

1

13

EE

EE

DE

EE

4

2

14

EE

EE

EE

DE

4

3

15

EE

EE

EE

EE

4

4

16

  1. Enumeration of the values of Z i , Z j and X ij for different values of S Ai , S Bi , S Aj and S Bj . The hidden variables are oriented in a hierarchical structure. For instance, the value of Z i depends on the values of S Ai and S Bi . Similarly, the value of X ij depends on the values of Z i and Z j . Thus, the value of the dependent variable X ij in turn depends on the values of four independent variables S Ai , S Bi , S Aj and S Bj .