Table 1 Decision table for merging of read alignments
Genome mapping | CCDS mapping | Agree? | Hard merge | Soft merge |
|---|---|---|---|---|
Unique | Unique | Yes | Keep | Keep |
Unique | Unique | No | Throw | Throw |
Unique | Multiple | No | Throw | Keep |
Unique | Not mapped | No | Keep | Keep |
Multiple | Unique | No | Throw | Keep |
Multiple | Multiple | No | Throw | Throw |
Multiple | Not mapped | No | Throw | Throw |
Not mapped | Unique | No | Keep | Keep |
Not mapped | Multiple | No | Throw | Throw |
Not mapped | Not mapped | No | Throw | Throw |