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Table 1 PtPAL (1-5) de novo transcriptome assemblies of P.taeda

From: The phenylalanine ammonia lyase (PAL) gene family shows a gymnosperm-specific lineage

MIRA1A Uniscript2 Uniscript length3 Total seq4
PAL1/MIRA P.taeda.JGI_rep_c1829 2081 295
PAL2/MIRA P.taeda.JGI_rep_c1015 2660 392
PAL3/MIRA P.taeda.JGI_rep_c9006 2826 142
PAL4/MIRA P.taeda.JGI_rep_c4552 2474 155
PAL5/MIRA P.taeda.JGI_rep_c10177 2269 62
Newbler 1B Uniscript 2 Uniscript
length 3
Total seq 4
PAL1/Newb contig57512 3573 2924
PAL2/Newb isotig35091 3022 606
PAL3/Newb isotig22550 3110 506
PAL4/Newb isotig41305 2538 279
PAL5/Newb isotig35702 2278 87
SeqMan NGen 1C Uniscript 2 Uniscript length 3 Total seq 4
PAL1/NGen Contig347 3773 2746
PAL2/NGen Contig13311 2889 560
PAL3/NGen Contig5954 2370 223
PAL4/NGen Contig26398 1798 154
PAL5/NGen Contig50748 2277 75
  1. 1A: miraEST (Mira) Version 3.0.5, 1B: Newbler Version 2.3, 1C: SeqMan NGen Version 3.0 (DNAStar), 2: Contig name, 3: Contig lengths, and 4: numbers of sequences assembled to form a contig.