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Table 5 Mutation detection evaluation

From: Automated extraction and semantic analysis of mutation impacts from the biomedical literature

Mutation detection using MutationFinder
Document (PMID) Correct Partially C. Missing Spurious Strict Lenient
      P R F P R F
10860737 200 0 0 2 99% 100% 100% 99% 100% 100%
12604240 90 0 0 1 99% 100% 99% 99% 100% 99%
12664592 24 0 0 0 100% 100% 100% 100% 100% 100%
12702265 46 0 11 14 77% 81% 79% 77% 81% 79%
12890481 92 0 0 0 100% 100% 100% 100% 100% 100%
12902331 173 0 7 5 97% 96% 97% 97% 96% 97%
15026177 142 0 5 0 100% 97% 98% 100% 97% 98%
17761677 49 0 0 0 100% 100% 100% 100% 100% 100%
19143837 154 0 3 0 100% 98% 99% 100% 98% 99%
9731776 2 0 0 0 100% 100% 100% 100% 100% 100%
14592457 170 0 138 3 98% 55% 71% 98% 55% 71%
Average 1142 0 164 25 98% 87% 92% 98% 87% 92%
Mutation detection using MutationTagger
Document (PMID) Correct Partially C. Missing Spurious Strict Lenient
      P R F P R F
10860737 191 0 9 5 97% 96% 96% 97% 96% 96%
12604240 89 0 1 1 99% 99% 99% 99% 99% 99%
12664592 24 0 0 0 100% 100% 100% 100% 100% 100%
12702265 41 0 16 0 100% 72% 84% 100% 72% 84%
12890481 91 0 1 0 100% 99% 99% 100% 99% 99%
12902331 171 1 9 4 98% 95% 96% 98% 95% 96%
15026177 146 0 1 1 99% 99% 99% 99% 99% 99%
17761677 49 0 0 0 100% 100% 100% 100% 100% 100%
19143837 148 0 9 0 100% 94% 97% 100% 94% 97%
9731776 2 0 0 0 100% 100% 100% 100% 100% 100%
14592457 297 0 11 0 100% 96% 98% 100% 96% 98%
Average 1249 0 57 11 99% 96% 97% 99% 96% 97%
  1. Comparative evaluation of the mutation detection performance, using MutationFinder and OMM MutationTagger.