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Table 2 Analysis results of module gene sets and KEGG pathways by ALIGATOR (P BH <0.2)

From: Searching joint association signals in CATIE schizophrenia genome-wide association studies through a refined integrative network approach

Gene set

P

P BH $

VEGAS-all module genes

1.0 × 10-4

0.007

VEGAS-top module genes

1.0 × 10-4

0.007

minP module genes

1.0 × 10-4

0.007

Asthma (hsa05310)

8.0 × 10-4

0.040

Tryptophan metabolism (hsa00380)

1.7 × 10-3

0.068

Gap junction (hsa04540)

2.3 × 10-3

0.076

Cytokine-cytokine receptor interaction (hsa04060)

2.9 × 10-3

0.082

Intestinal immune network for IgA production (hsa04672)

5.5 × 10-3

0.137

  1. $P values were adjusted by Benjamini & Hochberg (BH) method [20].