Table 1
From: Effective normalization for copy number variation detection from whole genome sequencing
FREEC Normalization | UG1 | UG2 | YRI1 | YRI2 | CEU | CEf | Yh1 | KOR |
|---|---|---|---|---|---|---|---|---|
GC content | 77,347,858 | 79,636,676 | 97,902,881 | 70,686,285 | 76,746,044 | 89,623,788 | 78,456,632 | 57,134,301 |
Mappability | 19,520,720 | 17,252,109 | 24,758,352 | 17,768,115 | 4,925,758 | 20,064,719 | 5,697,806 | 3,931,768 |
Control genome (in Population) | 37,100,227 | 20,683,564 | 67,291,545 | 163,831,511 | 48,113,551 | 32,010,850 | 50,189,736 | 33,322,468 |
Control genome (YRI1) | 41,084,695 | 37,640,839 | - | 163,831,511 | 52,945,367 | 87,318,862 | 50,727,044 | 38,000,863 |
Control genome (YRI2) | 117,640,623 | 74,253,250 | 67,291,545 | - | 58,461,174 | 62,120,940 | 69,839,893 | 78,225,240 |