Table 4
From: Effective normalization for copy number variation detection from whole genome sequencing
FREEC Normalization | UG1 | UG2 | YRI1 | YRI2 | CEU | CEf | Yh1 | KOR |
|---|---|---|---|---|---|---|---|---|
GC content | 13% | 12% | 28% | 20% | 12% | 24% | 11% | 21% |
Mappability | 30% | 29% | 79% | 51% | 48% | 80% | 36% | 45% |
Control genome (in Population) | 10% | 21% | 37% | 51% | 14% | 56% | 13% | 21% |
Control genome (YRI1) | 22% | 21% | - | 51% | 21% | 38% | 17% | 25% |
Control genome (YRI2) | 26% | 24% | 37% | - | 17% | 32% | 22% | 23% |