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Table 2 Results summary

From: A systematic model of the LC-MS proteomics pipeline

Performance indices

Median values

Peptide identification rate

0.17

Protein quantification rate

0.54

Protein quantification error

0.67

Percentage of detected markers

52%

LDA error on the original protein data

0.01

KNN error on the original protein data

0.03

LDA error on the observed protein data

0.18

KNN error on the observed protein data

0.24