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Table 1 Discovery and verification of bacterial sRNAs in previous studies.

From: Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs

Bacteria Computational discovery method Verification method Number of sRNAs Reference
    Predicted Tested Verified  
Escherichia coli QRNA Northern blot 275 49 11 [64]
Escherichia coli Pftools2.2 & RNAMotif Northern blot 227 8 7 [65]
Burkholderia cenocepacia QRNA Microarray 3,441 213 4 [39]
Streptomyces coelicolor BLAST & TransTermHP RT-PCR & microarray 37 32 20 [66]
Synechocystis PCC6803 RNAz Northern blot 383 2 2 [67]
Staphylococcus aureus RNAsim Northern blot 774 36 11 [68]
Escherichia coli Anonymous program Northern blot 601 6 3 [69]
Salmonella enterica Typhimurium sRNAscanner Northern blot 156 16 6 [46]
Streptomyces coelicolor RNAz & nocoRNAc Microarray 843 403 317 [47]
Burkholderia pseudomallei SIPHT, sRNAscanner & Rfam_scan RT-PCR 1306 15 8 This study.