Skip to main content

Advertisement

Table 2 List of B. pseudomallei sRNA sequences with their corresponding sRNA families as reported in Rfam.

From: Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs

No. sRNA Chr/strand Coordinates Coordinates from Rfam Type
1. Cobalamin.1 1/+ 1133342..1133609 (no record) Riboswitch
2. Cobalamin.2 1/+ 2072691..2072897 2072691..2072897 Riboswitch
3. Cobalamin.3 1/- 2090548..2090794 (no record) Riboswitch
4. Cobalamin.4 1/+ 2090844..2091164 (no record) Riboswitch
5. TPP.1 1/- 1504117..1504234 1504117..1504234 Riboswitch
6. TPP.2 1/- 3753305..3753517 3753386..3753517 Riboswitch
7. TPP.3 2/- 1490479..1490584 1490479..1490584 Riboswitch
8. FMN 1/+ 772307..772458 772307..772458 Riboswitch
9. Glycine 1/+ 3984000..3984174 3984000..3984108 Riboswitch
10. SAH_riboswitch 1/- 3907800..3907867 3907800..3907867 Riboswitch
11. Mini-ykkC 1/+ 1359254..1359300 1359254..1359300 Putative riboswitch
12. sucA 1/- 2274625..2274707 2274625..2274707 Putative riboswitch
13. yybP-ykoY 1/+ 3066135..3066276 (no record) Putative riboswitch
14. LR-PK1* 1/- (not predicted) 2314148..2314399 Cis-acting RNA
15. isrK 1/- 98332..98411 (no record) Hfq-binding RNA
16. 6S 1/- 1132173..1132396 1132214..1132395 Trans-acting RNA
17. SRP_bact 1/+ 1735400..1735501 1735400..1735501 Trans-acting RNA
18. tmRNA 1/+ 3041943..3042311 3041943..3042311 Trans-acting RNA
19. Anti-hemB 1/- 3790883..3790964 (no record) Trans-acting RNA
20. CRISPR-DR28 1/+ 3578911..3578934 (no record) Trans-acting RNA
21. RNaseP_bact_a 1/- 3481314..3481770 3481359..3481770 Ribozyme
22. P9 2/- 1749221..1749373 1749223..1749307 Gene
  1. * The LR-PK1 sRNA was not predicted in this study but has been identified in Rfam.