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Table 3 Number of remaining input sequences from each step of target identification on the previously reported miRNA-associated target sequences of Arabidopsi s

From: C-mii: a tool for plant miRNA and target identification

Step/Number of remaining sequences Default settings Customized settings
Number of input sequences 434 434
1. Sequence loading   434 434
2. Target scanning*   410 430
3. miRNA-target folding   410 430
4. Target annotation** UniProtKB/Swiss-Prot 400 405
  UniProtKB/TrEMBL 406 427
  1. * The default and customized binding scores for target scanning were ≤ 4 and ≤ 6, respectively.
  2. ** The default and customized BLASTX E-values for target annotation were 1E-20 and 1E-5, respectively. Both protein databases were prepared with plants only.