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Table 2 The ρdiff scores of the 1st and 1000th ranked SNP pairs and their associated P-values

From: iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies

Complete set of SNPs (355882 SNPs)
Disease 1stρdiff 1stP -value 1000thρdiff 1000thP -value Avg. ρdiff± SD
BD 0.2878 1.1410e-7 0.2680 3.4206e-7 0.2718± 0.0035
CAD 0.9317 <2.2204e-16 0.9132 <2.2204e-16 0.9171± 0.0031
CD 0.3085 3.6109e-8 0.2849 1.3351e-7 0.2887± 0.0034
HT 0.2834 1.4510e-7 0.2626 4.6022e-7 0.2667± 0.0037
RA 0.9042 <2.2204e-16 0.8866 <2.2204e-16 0.8903± 0.0031
T1D 1.0731 <2.2204e-16 0.9996 <2.2204e-16 1.0040± 0.0056
T2D 0.3338 8.8226e-9 0.2159 6.1867e-6 0.2198± 0.0052
Gene-only SNPs (176148 SNPs)
Disease 1 st ρ diff 1 st P -value 1000 th ρ diff 1000 th P -value Avg. ρ diff ± SD
BD 0.2447 1.2445e-6 0.2224 4.2957e-6 0.2259± 0.0032
CAD 0.9294 <2.2204e-16 0.9102 <2.2204e-16 0.9143± 0.0035
CD 0.2653 3.9790e-7 0.2248 3.7769e-6 0.2280± 0.0033
HT 0.1793 4.7229e-5 0.1561 1.7142e-4 0.1605±0.0043
RA 0.9040 <2.2204e-16 0.8832 <2.2204e-16 0.8875± 0.0036
T1D 1.0731 <2.2204e-16 0.9957 <2.2204e-16 1.0007± 0.0061
T2D 0.3338 8.8226e-9 0.2127 7.3731e-6 0.2168± 0.0052
  1. The highest and the lowest ρdiff scores including their associated P-values are displayed with the average scores of top 1000 SNP pairs from the analyses of WTCCC.