From: snpTree - a web-server to identify and construct SNP trees from whole genome sequence data
Data set | Percentage of concordance | |
---|---|---|
Exact match | cluster match | |
V. cholerae (raw reads) | 91 | 100 |
V. cholerae (contigs) | 85 | 100 |
S. aureus CC398 (raw reads) | 88 | 96 |
S. aureus CC398 (contigs) | 87 | 97 |
S. typhimurium (raw reads) | 61 | 100 |
S . typhimurium (contigs) | 53 | 100 |
M. tuberculosis (raw reads) | 58 | 78 |
M. tuberculosis (contigs) | 25 | 72 |