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Table 1 Evaluation table

From: snpTree - a web-server to identify and construct SNP trees from whole genome sequence data

Data set

Percentage of concordance

 

Exact match

cluster match

V. cholerae (raw reads)

91

100

V. cholerae (contigs)

85

100

S. aureus CC398 (raw reads)

88

96

S. aureus CC398 (contigs)

87

97

S. typhimurium (raw reads)

61

100

S . typhimurium (contigs)

53

100

M. tuberculosis (raw reads)

58

78

M. tuberculosis (contigs)

25

72

  1. The percentage of concordance from comparing SNP trees from snpTree server against the four published data set.