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Table 2 Sensitivity and specificity

From: snpTree - a web-server to identify and construct SNP trees from whole genome sequence data

Variable and cut-off value Sensitivity (%) Specificity (%)
Number of bp between SNPs   
0 97.8 100
10 97.2 99.99988
25 96.6 99.99975
50 95.8 99.99959
75 94.6 99.99935
100 93.8 99.99918
Number of bp from a sequence end   
0 97.8 100
10 97.8 100
25 97.8 100
50 97.8 100
75 97.8 100
100 97.7 100
  1. Evaluation of sensitivity (SN) and specificity (SP) using different settings of minimum number of bp between SNPs (prune) and minimum number of bp from a sequence end (e) for SNP detection on a simulated dataset consisting of a genome of 4,878,012 bp with 1,000 randomly SNP artificial inserted.