Table 1 Sequencing results from GS-FLX data sets: data 1 and data 2
From: Feasibility of using 454 pyrosequencing for studying quasispecies of the whole dengue viral genome
Data 1 (5 fragments) | Data 2 (2 fragments) | |
|---|---|---|
Total No. of reads | 54,440 | 134,441 |
Total bases | 12,004,318 | 31,212,389 |
Average read length | 221 | 232 |
Dereplicate sequencing result | ||
Number of unique reads | 45,184 | 116,561 |
Number of reads with N | 2,709 | 8,221 |
Amount of unique reads by BLAST result | ||
Success | 45,167 | 116,549 |
Failure | 17 | 12 |
Number of mapped reads for each serotype | ||
serotype 1 | 8,374 | 19,217 |
serotype 2 strain 16681 | 20,490 | 35,731 |
serotype 2 strain NGC | 3,642 | 7,036 |
serotype 3 | 9,020 | 25,142 |
serotype 4 | 3,208 | 28,987 |
Unclassified serotype/strain | 433 | 436 |