Figure 1
From: Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data
Workflow of the alternative splicing event identification pipeline. A) RNA-seq-derived transcriptome data was aligned using a customized RNA-seq pipeline based on known splicing junctions or Tophat. Cufflinks or Scripture was used for isoform annotation. Based on the data-derived transcript annotation, Alt Event Finder was applied to identify the novel alternative events. B) Strategies of Alt Event Finder for de novo event detection.