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Table 1 mRNA-seq experiments from NCBI SRA.

From: DFI: gene feature discovery in RNA-seq experiments from multiple sources

Tissue/cell line Number of experiments SRA
project ID
Project name
Kidney 3 SRP000225 Illumina sequencing human kidney RNA samples to study mRNA expression levels
Liver 3   
GM12878 (Blood) 7 SRP000228 RNASeq expression profiling for ENCODE project
Hep2G (Liver Carcinoma) 4   
K562 (Leukemia) 9   
Brain 1 SRP000626 Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
Cerebral Cortex 1   
Heart 1   
Liver 1   
Lung 1   
Skeletal Muscle 1   
Liver female 1 6 SRP001558 Sex-specific and lineage-specific alternative splicing in primates
Liver male 1 6   
Brain MAQC2 14 SRP001847 Evaluation of Statistical Methods for Normalization and Differential Expression in mRNA-Seq Experiments