Table 1 mRNA-seq experiments from NCBI SRA.
From: DFI: gene feature discovery in RNA-seq experiments from multiple sources
Tissue/cell line | Number of experiments | SRA project ID | Project name |
|---|---|---|---|
Kidney | 3 | SRP000225 | Illumina sequencing human kidney RNA samples to study mRNA expression levels |
Liver | 3 | Â | Â |
GM12878 (Blood) | 7 | SRP000228 | RNASeq expression profiling for ENCODE project |
Hep2G (Liver Carcinoma) | 4 | Â | Â |
K562 (Leukemia) | 9 | Â | Â |
Brain | 1 | SRP000626 | Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing |
Cerebral Cortex | 1 | Â | Â |
Heart | 1 | Â | Â |
Liver | 1 | Â | Â |
Lung | 1 | Â | Â |
Skeletal Muscle | 1 | Â | Â |
Liver female 1 | 6 | SRP001558 | Sex-specific and lineage-specific alternative splicing in primates |
Liver male 1 | 6 | Â | Â |
Brain MAQC2 | 14 | SRP001847 | Evaluation of Statistical Methods for Normalization and Differential Expression in mRNA-Seq Experiments |
UHR MAQC2 | 28 | Â | Â |