Table 2 Average precision for the intersection (*) of two methods.
From: Combining multiple ChIP-seq peak detection systems using combinatorial fusion
x * y | Average precision | Number of regions | |
|---|---|---|---|
| Â | Score combination | Rank combination | Â |
C * F = PeakSeq * SISSRs | 0.887166 | 0.887675 | 13293 |
E * F = CisGenome * SISSRs | 0.900260 | 0.885596 | 12841 |
C * E = PeakSeq * CisGenome | 0.902211 | 0.892652 | 12662 |
C * D = PeakSeq * QuEST | 0.910056 | 0.920872 | 11865 |
D * F = QuEST * SISSRs | 0.911046 | 0.908774 | 10789 |
D * E = QuEST * CisGenome | 0.914799 | 0.917028 | 14452 |
B * D = MACS * QuEST | 0.938479 | 0.937476 | 14528 |
B * C = MACS * PeakSeq | 0.941655 | 0.948495 | 12095 |
B * F = MACS * SISSRs | 0.942113 | 0.950036 | 11003 |
B * E = MACS * CisGenome | 0.949365 | 0.948955 | 14244 |
A * B = TRLocator * MACS | 0.951392 | 0.950802 | 16921 |
A * D = TRLocator * QuEST | 0.951877 | 0.950939 | 13270 |
A * C = TRLocator * PeakSeq | 0.952759 | 0.956961 | 11573 |
A * F = TRLocator * SISSRs | 0.959214 | 0.960584 | 10463 |
A * E = TRLocator * CisGenome | 0.959687 | 0.959111 | 13155 |