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Table 2 Average precision for the intersection (*) of two methods.

From: Combining multiple ChIP-seq peak detection systems using combinatorial fusion

x * y Average precision Number
of regions
  Score combination Rank combination  
C * F = PeakSeq * SISSRs 0.887166 0.887675 13293
E * F = CisGenome * SISSRs 0.900260 0.885596 12841
C * E = PeakSeq * CisGenome 0.902211 0.892652 12662
C * D = PeakSeq * QuEST 0.910056 0.920872 11865
D * F = QuEST * SISSRs 0.911046 0.908774 10789
D * E = QuEST * CisGenome 0.914799 0.917028 14452
B * D = MACS * QuEST 0.938479 0.937476 14528
B * C = MACS * PeakSeq 0.941655 0.948495 12095
B * F = MACS * SISSRs 0.942113 0.950036 11003
B * E = MACS * CisGenome 0.949365 0.948955 14244
A * B = TRLocator * MACS 0.951392 0.950802 16921
A * D = TRLocator * QuEST 0.951877 0.950939 13270
A * C = TRLocator * PeakSeq 0.952759 0.956961 11573
A * F = TRLocator * SISSRs 0.959214 0.960584 10463
A * E = TRLocator * CisGenome 0.959687 0.959111 13155