Table 3 Average precision for the union (+) of two methods.
From: Combining multiple ChIP-seq peak detection systems using combinatorial fusion
x + y | Average precision | Number of regions | |
|---|---|---|---|
| Â | Score combination | Rank combination | Â |
E + F = CisGenome + SISSRs | 0.8114 | 0.7997 | 26371 |
D + E = QuEST + CisGenome | 0.8190 | 0.8158 | 26457 |
D + F = QuEST + SISSRs | 0.8204 | 0.8038 | 25574 |
C + D = PeakSeq + QuEST | 0.8526 | 0.8475 | 22191 |
C + F = PeakSeq + SISSRs | 0.8545 | 0.8559 | 22876 |
C + E = PeakSeq + CisGenome | 0.8610 | 0.8522 | 24415 |
B + F = MACS + SISSRs | 0.8880 | 0.8950 | 20767 |
B + D = MACS + QuEST | 0.8883 | 0.8876 | 21242 |
B + E = MACS + CisGenome | 0.8983 | 0.8977 | 20768 |
B + C = MACS + PeakSeq | 0.8983 | 0.9033 | 19895 |
A + F = TRLocator + SISSRs | 0.9126 | 0.9030 | 19673 |
A + B = TRLocator + MACS | 0.9168 | 0.9158 | 20279 |
A + D = TRLocator + QuEST | 0.9168 | 0.9071 | 20117 |
A + E = TRLocator + CisGenome | 0.9193 | 0.9178 | 19720 |
A + C = TRLocator + PeakSeq | 0.9199 | 0.9177 | 19281 |