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Table 3 Empirical p-values estimated from 1000 permutations based on weighting score matrix 3.

From: Multi-species data integration and gene ranking enrich significant results in an alcoholism genome-wide association study

q-value Gene score
  ≥0.5 ≥1 ≥1.5 ≥2 = 2.5
q < 0.9 0.393 (6399) 0.367 (1863) 0.603 (399) 0.191 (866) 0.052 (178)
q < 0.8 0.525 (469) 0.292 (415) 0.441 (163) 0.310 (199) 0.131 (108)
q < 0.7 0.495 (8) 0.228 (164) 0.627 (5) 0.208 (117) 0.118 (72)
q < 0.6 0.286 (5) N/A N/A 0.225 (42) 0.093 (53)
q < 0.5 0.113 (5) N/A N/A 0.122 (39) N/A
q < 0.4 0.012 (5) N/A N/A 0.101 (27) N/A
  1. Based on Table 2, we used weight matrix 3 to rank genes (a total of 2458 genes) and then separated them according to their q-values. The number of SNPs in each q-value and score category based on COGA dataset is shown in parentheses. N/A: not available due to absence of the real data at those categories.