Skip to main content

Table 2 Statistics of the number of transcripts and genes detected

From: RNA-Seq analysis implicates dysregulation of the immune system in schizophrenia

Sample Number of transcripts Number of genes FPKMa (mean ± sd) Coverageb (mean ± sd) Number of genes with FPKM > 5
Control      
   1295-ZZ-4 18,675 15,176 15.28 ± 85.28 8.54 ± 45.80 7876
   1295-ZZ-9 17,134 14,330 14.36 ± 67.49 4.66 ± 21.03 6832
   1295-ZZ-13 18,638 15,205 13.52 ± 68.07 7.06 ± 34.89 7507
Case      
   1295-ZZ-21 18,274 14,883 14.86 ± 84.98 7.72 ± 43.89 6903
   1295-ZZ-32 18,796 15,315 14.59 ± 167.18 7.14 ± 74.54 7359
   1295-ZZ-36 17,837 14,668 11.84 ± 55.17 5.41 ± 24.17 6863
Pooled control 22,463 17,880 10.65 ± 70.63 18.04 ± 119.42 6134
Pooled case 22,256 17,620 11.67 ± 79.45 21.16 ± 143.79 6267
  1. aFor individually sequenced dataset, we used FPKM (Fragments Per Kilobase of exon per Million fragments mapped) to estimate transcript expression.
  2. bThe coverage was calculated based on the unit of transcript.
\