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Table 1 Overall quality of the retrieved gene lists

From: GLAD4U: deriving and prioritizing gene lists from PubMed literature

Query GO/ MIM gene count GLAD4U gene count EBIMed gene count   GLAD4U EBIMed
Apoptosis 1039 6037 (958) 1469 (387) Precision 0.1587 0.2634
   [195715] [10000] Recall 0.9220 0.3725
     F-measure 0.2708 0.3086
Cell adhesion 785 4195 (691) 1725 (305) Precision 0.1647 0.1769
   [125144] [10000] Recall 0.8802 0.3885
     F-measure 0.2775 0.2431
DNA repair 282 2476 (263) 1100 (180) Precision 0.1062 0.1636
   [60952] [10000] Recall 0.9326 0.6383
     F-measure 0.1907 0.2605
Hypertension 87 2046 (77) 135 (27) Precision 0.0376 0.2000
   [323818] [10000] Recall 0.8851 0.3103
     F-measure 0.0721 0.2432
Obesity 111 1778 (110) 350 (59) Precision 0.0619 0.1686
   [141615] [10000] Recall 0.9910 0.5315
     F-measure 0.1165 0.2560
Schizophrenia 94 1725 (90) 382 (44) Precision 0.0522 0.1152
   [91194] [10000] Recall 0.9574 0.4681
     F-measure 0.0990 0.1849
  1. Numbers in parentheses indicate the number of genes overlapping between the GLAD4U or EBIMed lists and the corresponding gold standard, numbers in square brackets indicate the number of publications retrieved by the query.