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Table 1 General features of S. amnii genome and related organisms.

From: Genomic sequence analysis and characterization of Sneathia amnii sp. nov

  S. amnii S. moniliformis L. buccalis S. termiditis
Approximate Genome Size (bp) 1,339,284 1,673,280 2,465,610 4,486,650
Total DNA Coding region (b) 1,207,722 1,556,870 2,139,206 3,918,335
Average intergenic region (b) 80 77 129 128
Average gene density (genes/Mbp) 968 903 935 938
G+C content (%) 28.30 26.28 29.65 33.38
tRNA genes 34 39 46 40
Predicted ORFS1 1,282 1,511 2,306 4,210
Average ORF size in bp (aa)2 942 (314) 1014 (338) 924 (308) 927 (309)
Genes assigned to COGs3 1,042 1,111 1,731 2,229
Genes associated with a putative function4 852 907 1306 2164
Genes with signal peptides 137 262 432 801
Genes with transmenbrane helices 257 343 530 901
  1. 1Open reading frames predicted as described in the Materials and Methods;
  2. 2Average ORFs sizes shown herein were calculated using protein-coding sequences available at GeneBank: S. moniliformis (1434 protein sequences), L. buccalis (2220 protein sequences) and S. termiditis (4083 protein sequences);
  3. 3Clusters of orthologous groups as described in the Materials and Methods;
  4. 4Genes assigned to general functional prediction only (Category R) and function unknown (Category S) were not included.
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