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Figure 2 | BMC Genomics

Figure 2

From: Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data

Figure 2

Effects of realignment, recalibration and marking duplication on SNP calling from high and low coverage data. Venn diagrams comparing identified novel variants between two call sets using different steps. Number of novel SNPs, the Ti/Tv ratio and number of common novel SNPs were listed in the comparisons between the initial call set and the call set with realignment step for high (A) and low (D) coverage data, between the initial call set and the call set with recalibration step for high (B) and low (E) coverage data, between the initial call set and the call set with marking duplication step for high (C) and low (F) coverage data.

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