Skip to main content
Figure 6 | BMC Genomics

Figure 6

From: A hybrid next generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover

Figure 6

Mapping assemblies and variant positions in the IGV graphical alignment viewer window. The reference transcript contig wcd-7783 is presented as an example. The two main panels in the middle show the IL and the DL mapping assemblies with read depth plots on the top. Illumina reads from the J5 and SC genotypes are shown as bars in blue and green respectively, reads from the DL assembly are grey. Vertical bars in different colours represent variant positions with different base compositions. The reference sequence (REF) is also represented on the bottom panel as vertical coloured bars.

Back to article page