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Figure 8 | BMC Genomics

Figure 8

From: A hybrid next generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover

Figure 8

(A, B) Unrooted phenetic trees from sequence alignments of haplotype-specific consensus sequences and sub-genomic sequences. A: Acyl-coA oxidase: ACYL_O and ACYL_P’ indicate the published sequences for the O and P’ sub-genome derived sequences GU443966_9 and GU443966_17 respectively. Reconstructed haplotypes representing consensus sequences from the genotypes SC and J5 are named as SC_CONS_O, J5_CONS_O (haplotype O) and SC_CONS_P’, J5_CONS_P’ (haplotype P’) respectively. B: Dehydration responsive element binding protein “DREB3”: DREB3_O and DREB3_P’ indicate the published sequences for the O and P’ sub-genome derived sequences GU443966_13 and GU443966_21 respectively. Reconstructed haplotypes representing consensus sequences from the genotypes SC and J5 are named as SC_CONS_O, J5_CONS_O (haplotype O) and SC_CONS_P’, J5_CONS_P’ (haplotype P’) respectively.

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BMC Genomics

ISSN: 1471-2164

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