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Table 1 GO terms over-represented in promoter classes

From: Novel core promoter elements in the oomycete pathogen Phytophthora infestansand their influence on expression detected by genome-wide analysis

  Biological Process Molecular Function
Class Term Description P Term Description P
INR+FPR GO:0044403 symbiosis 2e-32 GO:0004553 O-glycosyl hydrolase 8e-10
  GO:0005975 carbohydrate metabolism 3e-10 GO:0004650 polygalacturonase 1e-7
  GO:0007047 cell wall organization 8e-7 GO:0016491 oxidoreductase 5e-6
  GO:0055085 transmembrane transport 1e-5 GO:0048037 cofactor binding 7e-5
  GO:0006200 ATP catabolic process 6e-5 GO:0022857 transmembrane transport 7e-5
  GO:0046034 ATP metabolic process 7e-4    
INR alone none    none   
FPR alone GO:0044237 cellular metabolic process 1e-3 GO:0005515 protein binding 1e-3
  GO:0050790 regulation of catalytic activity 5e-3    
  GO:0044260 macromolecule metabolism 5e-3    
  GO:0044267 protein metabolic process 7e-3    
DPEP GO:0044237 cellular metabolic process 1e-3 GO:0003735 structural constituent of ribosome 3e-4
  GO:0009165 nucleotide biosynthesis 1e-3    
CCAAT GO:0006412 translation 8e-13 GO:0003735 structural constituent of ribosome 2e-18
  GO:0044249 cellular biosynthetic process 3e-12    
  GO:0010467 gene expression 2e-8    
  GO:0009058 biosynthetic process 6e-8    
  GO:0044237 cellular metabolic process 5e-6    
  GO:0006729 tetrahydrobiopterin biosynthesis 2e-3    
  1. Genes containing the indicated motifs that are associated with the over-represented terms are listed in Additional File 3.