Skip to main content

Table 1 GO terms over-represented in promoter classes

From: Novel core promoter elements in the oomycete pathogen Phytophthora infestansand their influence on expression detected by genome-wide analysis

 

Biological Process

Molecular Function

Class

Term

Description

P

Term

Description

P

INR+FPR

GO:0044403

symbiosis

2e-32

GO:0004553

O-glycosyl hydrolase

8e-10

 

GO:0005975

carbohydrate metabolism

3e-10

GO:0004650

polygalacturonase

1e-7

 

GO:0007047

cell wall organization

8e-7

GO:0016491

oxidoreductase

5e-6

 

GO:0055085

transmembrane transport

1e-5

GO:0048037

cofactor binding

7e-5

 

GO:0006200

ATP catabolic process

6e-5

GO:0022857

transmembrane transport

7e-5

 

GO:0046034

ATP metabolic process

7e-4

   

INR alone

none

  

none

  

FPR alone

GO:0044237

cellular metabolic process

1e-3

GO:0005515

protein binding

1e-3

 

GO:0050790

regulation of catalytic activity

5e-3

   
 

GO:0044260

macromolecule metabolism

5e-3

   
 

GO:0044267

protein metabolic process

7e-3

   

DPEP

GO:0044237

cellular metabolic process

1e-3

GO:0003735

structural constituent of ribosome

3e-4

 

GO:0009165

nucleotide biosynthesis

1e-3

   

CCAAT

GO:0006412

translation

8e-13

GO:0003735

structural constituent of ribosome

2e-18

 

GO:0044249

cellular biosynthetic process

3e-12

   
 

GO:0010467

gene expression

2e-8

   
 

GO:0009058

biosynthetic process

6e-8

   
 

GO:0044237

cellular metabolic process

5e-6

   
 

GO:0006729

tetrahydrobiopterin biosynthesis

2e-3

   
  1. Genes containing the indicated motifs that are associated with the over-represented terms are listed in Additional File 3.